RNA id: TCONS_00023518


Basic Information

Item Value
RNA id TCONS_00023518
length 545
RNA type processed_transcript
GC content 0.48
exon number 6
gene id XLOC_011902
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 8229868 ~ 8268406 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCAAGCCggacagccaatcagaagagctccATCCCTCAGACAGCAGAAActtctctgtttgtttgtttctggctgtatgtgggcggagtaatacacaaaggtgaaggatGAAAAGGCCTTTGTTTGATGTTACTGGCGAAATATCACAcggccatcagccaatcagatttaagaaccagacagaactgttAGTTTCCATGATTATGAATTCTCTCAACAAGTAGAGACAGATTTGGGTCAAGCTCATCAGACGGTTGTGTCTTTATACGAGTACAGAGCCAATAGGTCGGACGAGCTGTCGATGCGGCGGGGTGACGTGGTTCATGTGCTGTATAAAGACAATGACAGCTGGTGGTTTGGCCGACTGGTCAGTGGGCAGGAGGGATATTTCCCAGCATCTTATGTGGCTGATGAAGGGAACTTTGATGAGGAGCTGTCAAGAGCTTTAGAAGCACAACCGTCACTGATAGATCAACCTGAGGAAGCGGAGCATGCAACACCAGTTCAGATGTCCGCAGCCATCAGTGCCTCTGGAGAGCTGAAG

Function

GO:

id name namespace
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0071599 otic vesicle development biological_process
GO:0044458 motile cilium assembly biological_process
GO:0035845 photoreceptor cell outer segment organization biological_process
GO:0007368 determination of left/right symmetry biological_process

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-060803-1 Acts upstream of or within several processes, including motile cilium assembly; neuron development; and otic vesicle development. Is expressed in several structures, including Kupffer's vesicle; digestive system; nervous system; optic vesicle; and pleuroperitoneal region. Used to study Joubert syndrome. Human ortholog(s) of this gene implicated in Joubert syndrome 3; Joubert syndrome 4; and autism spectrum disorder. Orthologous to human AHI1 (Abelson helper integration site 1).

Ensembl:

ensembl_id ENSDART00000148477

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024829 lncRNA downstream 47727 8181721 ~ 8182704 (-) True XLOC_011901
TCONS_00024828 lncRNA downstream 518492 7710613 ~ 7711939 (-) True XLOC_011896
TCONS_00024527 lncRNA downstream 518501 7700815 ~ 7711930 (-) False XLOC_011896
TCONS_00024827 lncRNA downstream 518741 7643531 ~ 7711690 (-) False XLOC_011896
TCONS_00023506 lncRNA downstream 542639 7676631 ~ 7687792 (-) False XLOC_011896
TCONS_00024830 lncRNA upstream 511004 8748656 ~ 8754425 (-) True XLOC_011909
TCONS_00023544 lncRNA upstream 523141 8760793 ~ 8799574 (-) True XLOC_011910
TCONS_00023551 lncRNA upstream 1071223 9308875 ~ 9310637 (-) False XLOC_011915
TCONS_00024831 lncRNA upstream 1071223 9308875 ~ 9310710 (-) True XLOC_011915
TCONS_00024528 lncRNA upstream 1472361 9710013 ~ 9710692 (-) True XLOC_011916
TCONS_00023512 mRNA downstream 57051 7844927 ~ 8173380 (-) False XLOC_011900
TCONS_00023514 mRNA downstream 60657 7845580 ~ 8169774 (-) True XLOC_011900
TCONS_00023513 mRNA downstream 369212 7845260 ~ 7861219 (-) False XLOC_011900
TCONS_00023509 mRNA downstream 411440 7795559 ~ 7818991 (-) False XLOC_011899
TCONS_00023510 mRNA downstream 411487 7804883 ~ 7818944 (-) False XLOC_011899
TCONS_00023519 mRNA upstream 70530 8308182 ~ 8312923 (-) True XLOC_011903
TCONS_00023521 mRNA upstream 261130 8498782 ~ 8570367 (-) False XLOC_011905
TCONS_00023523 mRNA upstream 303075 8540727 ~ 8562586 (-) False XLOC_011905
TCONS_00023524 mRNA upstream 316181 8553833 ~ 8562687 (-) False XLOC_011905
TCONS_00023525 mRNA upstream 324669 8562321 ~ 8570257 (-) True XLOC_011905
TCONS_00023511 other downstream 411506 7812375 ~ 7818925 (-) True XLOC_011899
TCONS_00023505 other downstream 557671 7643531 ~ 7672760 (-) False XLOC_011896
TCONS_00023504 other downstream 724453 7504109 ~ 7505978 (-) True XLOC_011894
TCONS_00023487 other downstream 1271701 6958610 ~ 6958730 (-) True XLOC_011884
TCONS_00023473 other downstream 1629520 6591230 ~ 6600911 (-) False XLOC_011879
TCONS_00023520 other upstream 129053 8366705 ~ 8366816 (-) True XLOC_011904
TCONS_00023522 other upstream 285254 8522906 ~ 8523030 (-) True XLOC_011906
TCONS_00023566 other upstream 1828780 10066432 ~ 10073802 (-) True XLOC_011924
TCONS_00023570 other upstream 2039770 10277422 ~ 10280215 (-) True XLOC_011927
TCONS_00023573 other upstream 2088174 10325826 ~ 10361482 (-) False XLOC_011929

Expression Profile

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