RNA id: TCONS_00023513


Basic Information

Item Value
RNA id TCONS_00023513
length 870
RNA type mRNA
GC content 0.50
exon number 3
gene id XLOC_011900
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 7844927 ~ 8173380 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGACGGGAGCTGCTGGATACGCAGGTGAAGGTGGCGTCTCTGCAGGACATGTCCCTTCAGCTGCTGGTTCACTCTGAGGGCAGCGACTGTCTGGAGGCCAAAGAGAAGGTGCATGTGATCGGGAACAGACTCAAACTGTTGCTGAAGGGGGTGACCAGAGACATCCGAGAACTGCAGAAAACACTGGACATCAGCAGCAGTCAGCAGGATTTATCCTCCTGGTCATCTGCTGATGATCTGGATACATCTGGATCTCTGAGCCCTGTGTCTGGACGCAGCACACCGAGCCGCCAGCGACCGCAGGTCTCTCAACGCCGCTGGATCCGCTTTCTCCCATTCTGAAGATGAAGAGCGGCCATCTTGGTGCAGAAGCTTCCTGAAGCGGGTCTTCTGGGCCGCGCTGCCCCTGCAGATCATCCTGCTGCTGGTGCTGATTGTGGCCTGTCTTGTGCCTACGTCTGAGGATGGCTACAGCTGTGCCCAACTCAACAACTTCGCCCGCTCCTTCCACCCAATGCTCAGCTACACCAACGGCCCTCCGCCAATATGAGCCAATATGATGGGTTTCTCGAAATTGACAACTGCCAAAAATGGAGGTTGGCAGCCAAAGTGAATTATTACGGTGTCCTTGTACAGCTGCTAATCTTACCGTCATCAAAAGTCTTGTGTAGATGTTAGAACAAAGCCTATTGCACTGAAATCTGCTGTGTTAGTGCTACTGATGTTCTTCCATATTTTGATATTAAGGAGGAAGCTAGAGCGTAACTCAACACTGGTATTGTTACTGTAAAGGCACTTTCAGTCTTTCTTAATCATAAaaaaacgaaaacaaaaactgaaatgtGCGTGCGTCTTTCAGTATACttgtaa

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0007097 nuclear migration biological_process
GO:0051647 nucleus localization biological_process
GO:0034993 meiotic nuclear membrane microtubule tethering complex cellular_component
GO:0005635 nuclear envelope cellular_component
GO:0005640 nuclear outer membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-071218-4 Predicted to enable actin filament binding activity. Acts upstream of or within heart development. Predicted to be located in membrane and nucleus. Predicted to be integral component of membrane. Predicted to be part of meiotic nuclear membrane microtubule tethering complex. Predicted to be active in cytoplasm and nuclear outer membrane. Human ortholog(s) of this gene implicated in arthrogryposis multiplex congenita (multiple); bipolar disorder; cerebellar ataxia (multiple); and muscular dystrophy (multiple). Orthologous to human SYNE1 (spectrin repeat containing nuclear envelope protein 1).

Ensembl:

ensembl_id ENSDART00000148604

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024828 lncRNA downstream 133321 7710613 ~ 7711939 (-) True XLOC_011896
TCONS_00024527 lncRNA downstream 133330 7700815 ~ 7711930 (-) False XLOC_011896
TCONS_00024827 lncRNA downstream 133570 7643531 ~ 7711690 (-) False XLOC_011896
TCONS_00023506 lncRNA downstream 157468 7676631 ~ 7687792 (-) False XLOC_011896
TCONS_00024826 lncRNA downstream 310942 7528231 ~ 7534318 (-) True XLOC_011895
TCONS_00024829 lncRNA upstream 320502 8181721 ~ 8182704 (-) True XLOC_011901
TCONS_00024830 lncRNA upstream 887437 8748656 ~ 8754425 (-) True XLOC_011909
TCONS_00023544 lncRNA upstream 899574 8760793 ~ 8799574 (-) True XLOC_011910
TCONS_00023551 lncRNA upstream 1447656 9308875 ~ 9310637 (-) False XLOC_011915
TCONS_00024831 lncRNA upstream 1447656 9308875 ~ 9310710 (-) True XLOC_011915
TCONS_00023509 mRNA downstream 26269 7795559 ~ 7818991 (-) False XLOC_011899
TCONS_00023510 mRNA downstream 26316 7804883 ~ 7818944 (-) False XLOC_011899
TCONS_00023508 mRNA downstream 52884 7786246 ~ 7792376 (-) True XLOC_011898
TCONS_00023507 mRNA downstream 112223 7727464 ~ 7733037 (-) True XLOC_011897
TCONS_00023503 mRNA downstream 343344 7490247 ~ 7501916 (-) True XLOC_011893
TCONS_00023516 mRNA upstream 368649 8229868 ~ 8268406 (-) False XLOC_011902
TCONS_00023515 mRNA upstream 368649 8229868 ~ 8268406 (-) False XLOC_011902
TCONS_00023517 mRNA upstream 368686 8229905 ~ 8268406 (-) False XLOC_011902
TCONS_00023519 mRNA upstream 446963 8308182 ~ 8312923 (-) True XLOC_011903
TCONS_00023521 mRNA upstream 637563 8498782 ~ 8570367 (-) False XLOC_011905
TCONS_00023511 other downstream 26335 7812375 ~ 7818925 (-) True XLOC_011899
TCONS_00023505 other downstream 172500 7643531 ~ 7672760 (-) False XLOC_011896
TCONS_00023504 other downstream 339282 7504109 ~ 7505978 (-) True XLOC_011894
TCONS_00023487 other downstream 886530 6958610 ~ 6958730 (-) True XLOC_011884
TCONS_00023473 other downstream 1244349 6591230 ~ 6600911 (-) False XLOC_011879
TCONS_00023518 other upstream 369212 8230431 ~ 8237652 (-) True XLOC_011902
TCONS_00023520 other upstream 505486 8366705 ~ 8366816 (-) True XLOC_011904
TCONS_00023522 other upstream 661687 8522906 ~ 8523030 (-) True XLOC_011906
TCONS_00023566 other upstream 2205213 10066432 ~ 10073802 (-) True XLOC_011924
TCONS_00023570 other upstream 2416203 10277422 ~ 10280215 (-) True XLOC_011927

Expression Profile

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