RNA id: TCONS_00024829


Basic Information

Item Value
RNA id TCONS_00024829
length 812
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id XLOC_011901
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 8181721 ~ 8182704 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAAAAATGAAACTAATTCAGTTAGAAGACGTTAGTTCTAATATAAGTTGGTACActgatatttttacaattttcgtAGAAGAAATAGAGTATTGTTACTAGTAGCCTATGTATAGCAACTCAGAAAGTGTCTAACAAAAAGCTTCAGGATTGTGGTCTTGAGtttattctgtttgtttattttggtaTATAATGCATAGAGTGTCCCTTTTCGTCCTTATAAGATAATTAGAATAGACATTCACACTATTCTTTTACAGTCTAGAtacataaatgtgtatttatatagctaaATGTCAGAATATAAATAGTCTGAATGCCTATTATAAATGTAACGTAACGTTTGCTGTTTCTATAGTTACCTCAGAGCTCAAGACAGACTGCAGCAAGGCTGAGGACTCAAGCGAGATATTTTGCTTTCATCTCAGGAAAGGCAAACAGAACAATACCATATTGAAAAGATTCCCAAGAGGCACTCTGCTGTACTTTCTGCTCTTCCTAGTTTGCATGGTTtgctatatttaaaataagcatattCCTTTACTTACCATGAAATTGTCATCATTTTCAAGTACCATGTACATATTGTGGCttataaatatgatatattttgCAATAATTCGTAACCATGGTTAAAAGTAATTTAACGTACACTTAGTTACACTTTCacttatgccccattcacactcggcgccgcttcagaggcattgctcgctgcagaagttatgactttttcaacttttcaagcgccaatgggagtgtcaaccaatcagattgctgtatgcaaatacaccagctagactagggatggg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024828 lncRNA downstream 469782 7710613 ~ 7711939 (-) True XLOC_011896
TCONS_00024527 lncRNA downstream 469791 7700815 ~ 7711930 (-) False XLOC_011896
TCONS_00024827 lncRNA downstream 470031 7643531 ~ 7711690 (-) False XLOC_011896
TCONS_00023506 lncRNA downstream 493929 7676631 ~ 7687792 (-) False XLOC_011896
TCONS_00024826 lncRNA downstream 647403 7528231 ~ 7534318 (-) True XLOC_011895
TCONS_00024830 lncRNA upstream 565952 8748656 ~ 8754425 (-) True XLOC_011909
TCONS_00023544 lncRNA upstream 578089 8760793 ~ 8799574 (-) True XLOC_011910
TCONS_00023551 lncRNA upstream 1126171 9308875 ~ 9310637 (-) False XLOC_011915
TCONS_00024831 lncRNA upstream 1126171 9308875 ~ 9310710 (-) True XLOC_011915
TCONS_00024528 lncRNA upstream 1527309 9710013 ~ 9710692 (-) True XLOC_011916
TCONS_00023512 mRNA downstream 8341 7844927 ~ 8173380 (-) False XLOC_011900
TCONS_00023514 mRNA downstream 11947 7845580 ~ 8169774 (-) True XLOC_011900
TCONS_00023513 mRNA downstream 320502 7845260 ~ 7861219 (-) False XLOC_011900
TCONS_00023509 mRNA downstream 362730 7795559 ~ 7818991 (-) False XLOC_011899
TCONS_00023510 mRNA downstream 362777 7804883 ~ 7818944 (-) False XLOC_011899
TCONS_00023516 mRNA upstream 47164 8229868 ~ 8268406 (-) False XLOC_011902
TCONS_00023515 mRNA upstream 47164 8229868 ~ 8268406 (-) False XLOC_011902
TCONS_00023517 mRNA upstream 47201 8229905 ~ 8268406 (-) False XLOC_011902
TCONS_00023519 mRNA upstream 125478 8308182 ~ 8312923 (-) True XLOC_011903
TCONS_00023521 mRNA upstream 316078 8498782 ~ 8570367 (-) False XLOC_011905
TCONS_00023511 other downstream 362796 7812375 ~ 7818925 (-) True XLOC_011899
TCONS_00023505 other downstream 508961 7643531 ~ 7672760 (-) False XLOC_011896
TCONS_00023504 other downstream 675743 7504109 ~ 7505978 (-) True XLOC_011894
TCONS_00023487 other downstream 1222991 6958610 ~ 6958730 (-) True XLOC_011884
TCONS_00023473 other downstream 1580810 6591230 ~ 6600911 (-) False XLOC_011879
TCONS_00023518 other upstream 47727 8230431 ~ 8237652 (-) True XLOC_011902
TCONS_00023520 other upstream 184001 8366705 ~ 8366816 (-) True XLOC_011904
TCONS_00023522 other upstream 340202 8522906 ~ 8523030 (-) True XLOC_011906
TCONS_00023566 other upstream 1883728 10066432 ~ 10073802 (-) True XLOC_011924
TCONS_00023570 other upstream 2094718 10277422 ~ 10280215 (-) True XLOC_011927

Expression Profile

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