XLOC_011913 (nkl.1)


Basic Information

Item Value
gene id XLOC_011913
gene name nkl.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 8896383 ~ 8907682 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023547
TTCAGGTCGGTCAGAAATCGTCTGCTAAGATGCTCCGCAACATCTTTCTGGTCGGCTTGCTCATATATGCAGTCTCTGCAGCTCACTGGGAGGTTCGTGAAGTGGACTCTGCTGAGGATGAACTTGAAGAAACTCCTGAAGACAACATGGTAAAGCAGAAGTTTCCCGGTAAATGCACAATATGTAAATACATCATGAATCAGGTGAAGAAGAGACTTTCCACTAAGTCAACGCCGGATGAAATCAAAAACAATCTGATGAACATCTGTAATAAAGCTGTAGTGCTGAAAAGTCAGTGCAAGAAATTTATTCAGAAGCACATACACACTCTGATCGACGAGCTGATGAACGACGACGGACCAAACACCATCTGTACTAAAGTGCACGCCTGCAAATCTGAACCACCCATTAAAGAGTTCATTTTTATTCATGAGCAGGCTTATAGCAAGCTGTGAATGAGAATAAAAAGATGTGAATGAAGCATATGAATTACAGTGAAAGCTCATTAAATATATGACTGTATAAAAA
>TCONS_00023548
ATGCTCCGCAACATCTTTCTGGTCGGCTTGCTCATATATGCAGTCTCTGCAGCTCACTGGGAGGTTCGTGAAGTGGACTCTGCTGAGGATGAACTTGAAGAAACTCCTGAAGACAACATGGTAAAGCAGAAGTTTCCCGGTAAATGCACAATATGTAAATACATCATGAATCAGGTGAAGAAGAGACTTTCCACTAAGTCAACGCCGGATGAAATCAAAAACAATCTGATGAACATCTGTAATAAAGCTGTAGTGCTGAAAAGTCAGTGCAAGAAATTTATTCAGAAGCACATACACACTCTGATCGACGAGCTGATGAACGACGACGGACCAAACACCATCTGTACTAAAGTGCACGCCTGCAAATCTGAACCACCCATTAAAGAGTTCATTTTTATTCATGAGCAGGCTTATAGCAAGCTGTGA
>TCONS_00023549
AAATCGTCTGCTAAGATGCTCCGCAACATCTTTCTGGTCGGCTTGCTCATATATGCAGTCTCTGCAGCTCACTGGGAGGTTCGTGAAGTGGACTCTGCTGAGGATGAACTTGAAGAAACTCCTAATGACAACATGGTAAAGCAGAAGTTTCCCGGCATGTGCAGTTTATGTAAATATGTCATGAAGCATGTGAAGGAAAGAATTTCCGCTGACTCAACGCCAGATGAAATCAAAAACAAACTGATGAACCTCTGTGAAAAAGCTTGGCTGCTGAAAGGTCAGTGTCAGAAATTTGTGAAGACTCATTTACACACTCTGATCGACGAGCTGATGACGAATGACGGAGTAAACACCATCTGTGCTAAAGCGCTGGTCTGCAAATTTGGACCACCCAgaaaagagttcaattttattcATGACCGGGCTGTGAATGAGAATGAAAAGATGTGAATGCATTAAATGCATTACAGTCAAAGCTCATTAAATATATGACTACATAGAAA

Function

symbol description
nkl.1 Predicted to act upstream of or within defense response to bacterium and lipid metabolic process. Is expressed in several structures, including caudal fin; digestive system; gill; immune system; and myeloid cell.

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0042742 defense response to bacterium biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-525 Predicted to act upstream of or within defense response to bacterium and lipid metabolic process. Is expressed in several structures, including caudal fin; digestive system; gill; immune system; and myeloid cell.

Ensembl:

ensembl_id ENSDARG00000058673

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023547 False 528 mRNA 0.41 5 8896383 8907682
TCONS_00023548 False 426 mRNA 0.43 5 8896456 8899323
TCONS_00023549 True 503 mRNA 0.42 5 8903985 8907668

Neighbor

gene id symbol gene type direction distance location
XLOC_011912 nkl.3 coding downstream 9648 8879812 ~ 8886735 (-)
XLOC_011911 nkl.4 coding downstream 33959 8854108 ~ 8862424 (-)
XLOC_011910 BX323450.1 coding downstream 96809 8760793 ~ 8799574 (-)
XLOC_011909 tex36 coding downstream 141958 8748655 ~ 8754425 (-)
XLOC_011908 ctbp2a coding downstream 168635 8595588 ~ 8727748 (-)
XLOC_011914 zranb1b coding upstream 43767 8951449 ~ 8976307 (-)
XLOC_011915 CU855685.1 coding upstream 401193 9308875 ~ 9310710 (-)
XLOC_011916 NA coding upstream 802331 9710013 ~ 9710692 (-)
XLOC_011917 NA coding upstream 980922 9888604 ~ 9893781 (-)
XLOC_011918 egln3 coding upstream 1004354 9912036 ~ 9936915 (-)
XLOC_011906 CU462878.1 non-coding downstream 373353 8522906 ~ 8523030 (-)
XLOC_011904 BX248131.1 non-coding downstream 529567 8366705 ~ 8366816 (-)
XLOC_011901 NA non-coding downstream 713679 8181721 ~ 8182704 (-)
XLOC_011896 BX511121.1 non-coding downstream 1184444 7643531 ~ 7711939 (-)
XLOC_011930 NA non-coding upstream 1772103 10679785 ~ 10686313 (-)
XLOC_011931 NA non-coding upstream 1788005 10695687 ~ 10695917 (-)

Expression


Co-expression Network