G379592


Basic Information

Item Value
gene id G379592
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 459307 ~ 460431 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU433955
TTTCACTATCAGCCACCGGCCGATAGACCCTTTTCACGGACTGTGATGACGCGTTTTAACAGTCATCAATATCGTAAATCCTGCAAAGTTTTTTATATTTTCTTTTTTTTTTTTTTTTAAATGTATGTACATTTATAACAATATACTTAGTATTATATTACCTTTGCATCAAATTACAAAAACCTAGTTAACGCTGCTGTGAGGGTGTTTCTAATACAGCAGCTATGGAAGTGACAGTAAAAATGACATCTTTCTTTCTTCTGACTGCCGTTATCAATCGCTCTCTATTTTTTTCCTATTTATGAAAGTTGTGAAAACACTATTGTGGAGTTTTTCTTTTGCTATTTGAGCAAATGGAAACACAAAAAAATATATTTAATGTATTCTCTCATTCACCGCTATAGAATTTTACCCAACTATGACGACTTCCGCTTCTGAGAAACCCGGAAATGTGAAAAGGGTCTATTATTTAAAAAAACAGCCGATGATCAGGGCCGATCATATCCTGTCAATCAAAAAGGTGCGAAAAATGTGTTCAGACTGCAACTCATACTGTGTGTGAAGAAAATCTCTCGTGTTAAATTTAGTTAACACGACAATAATGCATTAACAGTTAAAAAAAGCGATGTTAAAGCAGGCTCTATTTGACCCTATGAATCACCCGTAGTTCAAGCTAGGGTTGCCAGGTCTGCTTTTTTTTTTTTGCTACATCAAACATTAATTGTAGCGCCTCCCATCCGATAATCACAAAGAGCTTTGAGTTTTGTTGCTTATGATAAGAAACAAAGTCTCAGTTTTCAAATTCTGTCCATTTTATCACGAAATTCAAACAATAAATGGCGTTTTGACTTCGTGGCAGATCGCTGTATCGCCTCAGCGGTAGGGCGGAGCGCGAGTCTTTTCTTCCACATTAAATACAAGGTAGCCTATATCTCAAAAAACATGCATGAACATCAAAAAGTATGTTGAAAGATACAGTACAACTTACCGGAATGTCTCATGTAATCACTTAATCTGTGTTTCAACCGCGGAAAGACGTCAATATAACAGTTTGAGAACAATGTCACACAAGGTTTTCCAGTGTTCACAGTTTCTTAGTTAGCCATATATATATATATATATATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU433955 True 1125 lncRNA 0.35 1 459307 460431

Neighbor

gene id symbol gene type direction distance location
CI01000189_00448469_00457564 JADE1 coding upstream 1122 448469 ~ 458185 (+)
CI01000189_00438982_00445216 ASMT2 coding upstream 13662 438982 ~ 445645 (+)
CI01000189_00322834_00332685 MOCS1 coding upstream 126557 322834 ~ 332750 (+)
CI01000189_00297654_00300990 FOSL2 coding upstream 157849 297654 ~ 301458 (+)
CI01000189_00183881_00277704 BRE, BRE.L coding upstream 181603 183881 ~ 277704 (+)
CI01000189_00537167_00546397 NA coding downstream 76736 537167 ~ 547307 (+)
CI01000189_00552262_00553370 NA coding downstream 90402 550833 ~ 553486 (+)
CI01000189_00613239_00646678 NA coding downstream 151168 611599 ~ 646948 (+)
CI01000189_00671005_00685458 RPS6KA1, RPS6KA2 coding downstream 210574 671005 ~ 686271 (+)
CI01000189_00693840_00694391 TRNP1 coding downstream 233270 693701 ~ 695967 (+)
G379561 NA non-coding upstream 43259 415750 ~ 416048 (+)
G379560 NA non-coding upstream 44816 414240 ~ 414491 (+)
G379558 NA non-coding upstream 50546 408557 ~ 408761 (+)
G379557 NA non-coding upstream 50996 408073 ~ 408311 (+)
G379556 NA non-coding upstream 51545 407523 ~ 407762 (+)
G379599 NA non-coding downstream 13379 473810 ~ 474024 (+)
G379627 NA non-coding downstream 117954 578385 ~ 579319 (+)
G379582 NA non-coding downstream 156161 616592 ~ 617478 (+)
G379570 NA non-coding downstream 300115 760546 ~ 764103 (+)
G379695 NA non-coding downstream 334758 795189 ~ 795509 (+)
G379600 NA other downstream 15184 475615 ~ 496908 (+)
G379799 NA other downstream 552115 1012546 ~ 1012903 (+)
CI01000189_00987665_01058757 PACRG other downstream 555600 987525 ~ 1059385 (+)
G381120 NA other downstream 2378790 2839221 ~ 2841125 (+)
G381491 NA other downstream 3165305 3625736 ~ 3626855 (+)

Expression


Co-expression Network