G379600


Basic Information

Item Value
gene id G379600
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 475615 ~ 496908 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU433965
TGCCAATGAGAAACAAATAATCATATTTACACAAACATAAGCAAGCTAAGAATCAGAGAACACCTCTGCAAAAGAAAAAAGAAGAAAAAAAAACATACAGGACATGGACATATAACTGTAAATTATTGCTTCATGTTCACAGGTTATGAACTACAGTTACAGTACTAGACAATATCTATATCCAAACAGAACAGCAACAGTGATAGAGCTGACCATCTGTAGACTTCCTTAAAAAAGACGAACAAGATTATTTTACTGTTACGAAGCAACAATAGCCTTAAAGACAGTAAAAATATCAATACATTATGCTGCCAATGACAGGCTTATCTGTAACAGCTCAGTACAAATTTGTTTCATATACTTCGCTTTACTTCTTCCTTTTGTCTTAAAGGTGAACACGCACTAAACTCAAAGAGTCCAAATCATTTCTTCATGCTGGTTATCAATAACTCAGTGAGCTTTGTTCACCCATGTTTCTCACCCCTGCAGTGACCGAACACCCGAAAAAAACAACAGGTAGAAACAGGCAGGAGAAAAGGGCTGCATTCAGAGAGAAATACAAGCAGGAAAGACTGCATCTATGGAAAAGTCACAGCATGCAGAATTACAAAAAACAAAACAAAAAATTGCTAAAGGACTCCTTCGTCATTGAAAGATTGACACTTGAACACTTGAAATCTTTTATCTTATAAGCAAGGGAGCAAAGGCAATTTAGAAAGTAACAGTTATTTTTTTGCATGATTTCTTTTTTATGCGATTTACACATTGCCATAATCACTTTTCAAAATATGATTGAATATCATTCAATATTTAACTGGATTTTCTTTTTTTCTTTTTTTGACTGAAATATGACTTTTAATAAGGCTAATTTGACCGCCATCATTACATGACTCTCTGCAATCCTCAATCTGATTGGTCAATCGCTACACTCAGCTTCACTGACTGTACATTATTTCTACAACATGTATTTTAAAATGACATTATTCATCAATTTGTAACCATTTTGGTATGAATTAACACAGTGAGTATTTATAAACTGGAAAAAAAAAAAAGAGACATAAAAGACCTTGGATAGTTCACCCAAAAATAGATGTCGTTCCAAAGTTGTATACTTTATTTTGATAAAATGAGATATTTTGAGAAGGTGTTTTTGTTCAAACAATGGAAGTAAATGGGCACCAGAAATGTTTGTTCATTGTTCAAAATTACATTTTATGTTCCAGAGAAGAAAGAAAGTCTCATAGGTTTGGAACAACATATTCATTTTTGGGTGAACTATTCCTTTAAGATTTAATCTGTCAATGCAAAATACACAACAGTTAACATTGATATGACAGTAGTAAAGCATTCATACAGTAGTTCTGGGCCAAGTCACTGATTTTTACCTTGAAACTTGAGCACAAGTCAGTGTAGATTCAGTAAACATATGCAGAGACACCAAACATTGTCAGTGCAAAACAATGCAAATGATACTGAAGTTGTAGTGAGAAGAAGCTAAAGCATAAATGTGCCAAACAAAGATGGGGTGAAACCACGACCCATAACATGTGCTTTTTTTCTAATTGTTTGACTGTATACAAGTACAAAATATCGAACTTTACACCTGACAACTGTTTCTTCACTTTCCAAGGCCATCTCTCTGAAAGATAGCAGTCAGATATGCTCAAAGTTGCTTTAACAGAGTATAAAATACACCAGTTAGCATGCAAAAATGTGCGGTATCAAATACACAGTAAGAATAATACACATCTAACTTAGTGAACGAACGTTTAACACCCTCTCGTCTTCGCCAACATGACTGAAACACTTCACCTGACACCTTCGCTATTATCGCTTCCATCAAACAACTTGTCATCCCATTCTAGCATGGTATGAACAGGCATAAATACGCACACAGGTCATAATCCCAGCGAGCCGCGCCACCGCTGTAGGTGTGCCAACCTGACCGATATGGAGATAAACACGGGCTTTTTTTCTTTGATGATCAATCAAAGTGACAAACAGTAACAAAGTTTACATGTAATCTATTTCTACGACTGTTAATTACAATTACTGCTCTTTAATGCTACAGGACAAAGACTCTAAATGAGGGAATGAAAGTGCTATGATTGTGAGAGGGGGGGGTCGCAAGCTTATCGCCCCCTGTCTGTCCCGTGAGGCAGCGGTGAGACAGTGTGTTCAGTCCACGAGTCCAGTTCAGAACACCACAAGTCACCTGTGCACTGAGCACCCCTCCAAATCCATCCATGTCTTAGTTTAGCTTTTTTTGTTATTGAAATAAAGCGTGCCTTTCCCTGGATGAGAGAAAGAGACACAGAGAGAGAGAAAAACGTGTGCAGTGTGCCGAAGGTTTTAGTTGTAGACTTTTGGGGGACCGTCGGGACGTCTGGTCTGGACTATCTTGCCTTTTGGCCGGGCTTCTTCCTCTTCCTCAGTTTCGCTCTCACACACGTGGACCACCACGCTAGGAGTGGACTCTGTACCCGCATGCAGCTCGTACTTCTCACCTGGTCCCAGTTTGGCCACAGCACACAGCAGGTCGTAGTTGATCACAGGTGTGGCATCTTCACTCTGACTCCATCCCACAGGTGGGGACGAAGGTGGAGAGATAAGGAACTGCTTGACAGGTTGAGGCGGGGCAAGGTATGTCTTGTCCACATCATCCCCTGAATTCTGCACCTGTGCGAAGTACAGTTTTAGTTTAATGCCGTTGAAATCAGATTCATGGAGCTCAATGCGTGCGCGTGCAGCAGCCTCTGGAGTGCTGAAGCTGATCCGAACCCTTCTGAAACTCTTGAACATCTGGAAGGACGTCTGCTCATCATAGATCCTGAACAGAGCCTCAAACCGCTCCTGCATTTTGTCGGATGTAAACACCTCAGTGTCTACATCGCAGGCGATGAGCGTCAACATCTCCAGTTTCATGTTTATCGATGGCATTCCCTCTTTTGCTGCTTGTAAACAGATAAATAAAGAAATGAGGTCTTTTACTCCCTTTTCTCTCTCGCTCGCTTTTTCTTTTGTATCTGTGCGGCTCTCTGAGGCTTAAAGTCTTTTGTGTGTTGGTGAGGTACTGACTCAAAACTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU433965 True 3087 TUCP 0.40 4 475615 496908

Neighbor

gene id symbol gene type direction distance location
CI01000189_00448469_00457564 JADE1 coding upstream 17430 448469 ~ 458185 (+)
CI01000189_00438982_00445216 ASMT2 coding upstream 29970 438982 ~ 445645 (+)
CI01000189_00322834_00332685 MOCS1 coding upstream 142865 322834 ~ 332750 (+)
CI01000189_00297654_00300990 FOSL2 coding upstream 174157 297654 ~ 301458 (+)
CI01000189_00183881_00277704 BRE, BRE.L coding upstream 197911 183881 ~ 277704 (+)
CI01000189_00537167_00546397 NA coding downstream 40259 537167 ~ 547307 (+)
CI01000189_00552262_00553370 NA coding downstream 53925 550833 ~ 553486 (+)
CI01000189_00613239_00646678 NA coding downstream 114691 611599 ~ 646948 (+)
CI01000189_00671005_00685458 RPS6KA1, RPS6KA2 coding downstream 174097 671005 ~ 686271 (+)
CI01000189_00693840_00694391 TRNP1 coding downstream 196793 693701 ~ 695967 (+)
G379599 NA non-coding upstream 1591 473810 ~ 474024 (+)
G379592 NA non-coding upstream 15184 459307 ~ 460431 (+)
G379561 NA non-coding upstream 59567 415750 ~ 416048 (+)
G379560 NA non-coding upstream 61124 414240 ~ 414491 (+)
G379558 NA non-coding upstream 66854 408557 ~ 408761 (+)
G379627 NA non-coding downstream 81477 578385 ~ 579319 (+)
G379582 NA non-coding downstream 119684 616592 ~ 617478 (+)
G379570 NA non-coding downstream 263638 760546 ~ 764103 (+)
G379695 NA non-coding downstream 298281 795189 ~ 795509 (+)
G379700 NA non-coding downstream 345479 842387 ~ 852067 (+)
G379799 NA other downstream 515638 1012546 ~ 1012903 (+)
CI01000189_00987665_01058757 PACRG other downstream 519123 987525 ~ 1059385 (+)
G381120 NA other downstream 2342313 2839221 ~ 2841125 (+)
G381491 NA other downstream 3128828 3625736 ~ 3626855 (+)
G381655 NA other downstream 3623479 4120387 ~ 4122344 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012149 rcan3 coding NC_007128.7 CM002901.2 26879725 ~ 26926577 (-)