XLOC_012034 (reep3a)


Basic Information

Item Value
gene id XLOC_012034
gene name reep3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 19607387 ~ 19626357 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023746
AACATGACATCGTCCCTAGTCCGAAAAGGACATGCGAAGAGGAAaacaatacatacatttttaacacAACGGGACATCATGTAGGAAGACGACAACAGCAGAAACAACCGGTTTATTCGTCAAATAACGATGTCATCTAGCAGAATTGCGGATTTCAGGAAGCATACGTTAAAATCAGGAACTCGGTGTTCGAGACAGAAGTTAATGTTTACGTTAGTTActgtttatttgaataaattattcatCTGAACCAAACCTGCAGCGAACCTCATAACTTTAAAGTGCAACAGGTTACTGCAAGATGGTGTCGTGGATTATATCAAGGGTCATCGTTCTTGTGTTTGGAACGCTGTACCCTGCCTACTATTCCTTTAAAGCTGTCAAATCCAAAAACGTCAAAGAATATGTGCGATGGATGATGTACTGGATTGTGTTTGCTCTTTACACAGTGGTGGAGACGATCACAGATCTTTCTTTGGcttgGTTTCCAGTTTATTATGAGCTAAAAATGGCTTTCGTCTTTTGGCTGTTGTCTCCCTACACCAGAGGAGCCAGTGTCATCTACAGGAAGTTCCTACACCCTATGCTGGCATCCAAAGAGAGGGAGATTGATGAATATATTGTCCAGGCCAGAGAGAGGAGCTATGAGACCATGGTGAATTTTGGGCGTCAGGGTCTCACAATCGCAGCCGCTGCTGCTGTCACTGCTGCTGTGAAGGGACAGGGGGCCATCAGTGAACGTCTGAGGAGTTTCAGTATTCCAGACCTGACGCAGGTTCCCTCTGAGCAATCAGCCATCTTCAACTCCAGCCGACGGGCCCTGCCGCCTGCGGATTCTGAGCCATATAAACAGACAGGGGAGGGTCATGAGGAGGAAACAGATGGAATATTCTCTGAAGATGAGGCGTCTGTGCAGAAGGGGCTACGCAGATCTCAGAGCGTGAAACTCACTCGTGCCAAAGCAGCACGCAAAGAGCCTCGCTATGGCTCTCTGAAGCTGAAACCTAGAAGAAGACAACTGGTTACATCGTCCACTTATGACCATCCATGAGCGTCCAATATAAAAGACCAGATGGGATCTAATCCTGGGTTTAAGTTTAATCCTAAACGTTGGTCCTGCTTTTCTTCAAATTAATGCTCCTTTTAAGCAGCACTAAACTAAAAATCTACAGACTTGCAGCATGAACAATGACTTTTACATTCATTGATTTAGTAAACGCTTTTTCCACAAACGAATACAACTGACAATGATGCATATGATAAATAGCGAATCTTGCATGCTGCGCTGTTCGTTCTAAAAAATACCAAAACCTAATACAAGTACAAGAAGTCTAAGAGTGTACTAAAAATCGAATGGTTCTGAGCACATTAGATCTGTACCTGCTTCTGTATAGACATCTCTTTTTACTACGAGCGTGTGGGCACATCCTGTAGCACAGATATCCCAGGTGTCCTTGCTCTCCTTCTACAGGGGCAGGTGTCAAGGTCAAAGGTGTCTCCGGTGTGCGGCTCGCAGCTTGTTTTCACAGTAATGAAATGAGCCTGGAAAAAAAATGAGTATGCATGTTATAGCAGGTATTTGTATAAGCATAGGTGTTTCAGCTTGTTAATGTTTACATTTCCATAGTTCACCCAGAATTCATTCTGCTTTCTTCATCCTCATGTCATTCAAAACAAGTACAGATTTCTTTGATGGAATTTAAAAGGCGTAATTTTGAAGAATATCCTGTATGCTCTTTTCCATGTAATTTAAGTGAATTATTGtgctttatttgtgtattttagtcAATAAAAAATCACAAATAAAGCCCAATAAATGGATTATAAAAGTGTCCCAATTGACTACGCAATTTAAACTAAGGATGGTCAGACTTTGATGGAAGGTTATCAaaacaagcattttttattttcagtgaatTAACTTCGGAATGCTGTAAAATCACTATGTGcattagcaaaataaatattttgattggacaatatctggaatctgagggttcagaAGAACCCAAACAGTAAATCGCttttaaagttgtttagaatGAGTTCGTTTCTATGCATCCCAGCAGGGAtcagatgtcaacatgacatcagattgacgttgtaccctgaCGTAATGGGAACGTTACATTTTgtctggaaatgaaaatcaggttgatgtcaaaACCCAGCGTCAGGGCCATGTCAATGTccgacctaaaatcaaccaaataacgtctaatgatgttacagcttggcgtTGTGTGGATGTCACCATGACATATATCAGAGGTTGAATTTTAGGTGGTGAattcaggggtgcccaaattcaatcctggagggccggtgtcctgcaaagtttagcttcctttaacacacctgcctggaagtttttgtatacctagaaagagcttgactAGCTACGTCAGATATGTTTTATTGGAGTCgcaactaaaatatgcaggacactgtgTGAGTCCGAGCACCCCTAGTTTAAGGTGGTGAATCGACATTGAGTtttagtcactttctaacacaacttaaaaccaacgtcatttgatgttgttattggacgtcaaaacagcattgtccttagatgctagcTAGACATTGAATTATGATCACCTGGCATCacaacttaaatctaacctaatattaacgtcttctGACATTGTGTGCTTGCTAGGATATTACTAACTAAGAAGtacattttgatatatttatgagaggaaatgttaaaaatgtcttcataaaaaaaaaaatctttacttaatatgcaaattatttttggcataaaataaaatgtggtaATTTTAAATCTTTGGCTTTTCCCACAATTACACCCTTGCCCAACATATGTACAGGTTTAGTAGTGCAGGGTCACATGAGAACAACCTGATGTGTTTTCTTAACATGTTCCATATCAATTTcatttgaaattaaatataacatttcatACAATTTCCAAATGAACAACAAAATTGTGCATGTTAACAAGAGTTCATTTCATGTCTACATTGTAGGGAAGATTTTCTGTGATTATTCATCATTTcttggaaaaaattaaacaggataTTATTCAAAATgtatccttttttaaaaaaaaatttcaagtgTATCATACAGGTTAAAAACAACATGAGGATTAGCATTTTATCCTgcattttcaggtgaactatcgactatttaacttttaaatatgtaatgGATTTCTATCGTTGTAATCTCgattgtttgtgtgtttaggtCTCAACAGTATTTTAGAAGCTCTTTCCAAATACATTTCTTAAGTTAGGATTGTGTTTTGTTAAAACATTTTGAGGAATCCAGTTTAATGTGTTGAATGTTCATTTTAATCATGTTTGTTTCTGCATTTCATGCTACTGTTTCTCTCATTTCAATAGCTAAATGCACTAATTGCTGTAACATTTGACCAAAACACTCCAGCTTTATCATTGCAAACCATGAGAGGAGAGTGTGTCTGATGCTAGTTGACAAAGTGAGTTAAAAACATTGGTGTTTGTACATGTGTAAACAGTGGCAATGATTTCTTCTTTTTTGACCATGTTTGAGTTTCAGGGGGGAGAATTGGGTGTTAACATGTTTTAGAATGTTGTTTGTGATGGAGAAAACCTGTTGATTCTGGATGTGTGTACAGATTTGTGACAACAACAGCTGTATTGAGTGTGTTTGTAACCCTAGACCTAAAGTCATCAAATAAGGCTATTTCCTTTGACATTGGTGACAGGAAAAAATCAGGGAAAGACAGAAATGTGGCTATCACTAGAGAAACTTCCttgattaataaaaatgttttgtttttatgagcATGAAACATCAGTTTGTCTGTTTGAGAcaagacaataataaaatactaaatacaatA

Function

symbol description
reep3a Predicted to enable microtubule binding activity. Predicted to be involved in endoplasmic reticulum tubular network organization. Predicted to be integral component of membrane. Predicted to be active in cytoplasmic microtubule; endoplasmic reticulum membrane; and endoplasmic reticulum tubular network. Orthologous to human REEP3 (receptor accessory protein 3).

GO:

id name namespace
GO:0071786 endoplasmic reticulum tubular network organization biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005881 cytoplasmic microtubule cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0071782 endoplasmic reticulum tubular network cellular_component
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-051127-47 Predicted to enable microtubule binding activity. Predicted to be involved in endoplasmic reticulum tubular network organization. Predicted to be integral component of membrane. Predicted to be active in cytoplasmic microtubule; endoplasmic reticulum membrane; and endoplasmic reticulum tubular network. Orthologous to human REEP3 (receptor accessory protein 3).

Ensembl:

ensembl_id ENSDARG00000017569

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023746 True 3865 mRNA 0.38 8 19607387 19626357

Neighbor

gene id symbol gene type direction distance location
XLOC_012033 cyp26c1 coding downstream 72059 19522856 ~ 19535328 (-)
XLOC_012032 dicer1 coding downstream 141068 19419989 ~ 19466319 (-)
XLOC_012030 NA coding downstream 209202 19230734 ~ 19398185 (-)
XLOC_012031 gsc coding downstream 261866 19343015 ~ 19345521 (-)
XLOC_012029 flrt2 coding downstream 584397 19017394 ~ 19022990 (-)
XLOC_012035 fmn2a coding upstream 127202 19753559 ~ 19828505 (-)
XLOC_012036 chrm3a coding upstream 205319 19831676 ~ 19963718 (-)
XLOC_012037 dre-mir-2187 coding upstream 274397 19900754 ~ 19900857 (-)
XLOC_012038 NA coding upstream 340809 19967166 ~ 19972044 (-)
XLOC_012039 ryr2b coding upstream 382775 20009132 ~ 20118244 (-)
XLOC_012025 BX510991.1 non-coding downstream 1256542 18350726 ~ 18350845 (-)
XLOC_012024 BX465857.2 non-coding downstream 1323324 18283949 ~ 18284063 (-)
XLOC_012023 NA non-coding downstream 1424829 18148782 ~ 18182558 (-)
XLOC_012022 NA non-coding downstream 1577130 18025736 ~ 18030257 (-)
XLOC_012049 NA non-coding upstream 984119 20610476 ~ 20611884 (-)
XLOC_012051 NA non-coding upstream 1044041 20670398 ~ 20673891 (-)
XLOC_012054 BX927186.1 non-coding upstream 1076822 20703179 ~ 20703297 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000106_01854506_01862988 REEP3A coding CI01000106 null 1854212 ~ 1862988 (-)