Fish Transcriptome and Expression Database

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model fish

XLOC_012037 (dre-mir-2187)

Basic Information

Item	Value
gene id	XLOC_012037
gene name	dre-mir-2187
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007128.7
NCBI id	CM002901.2
chromosome length	53461100
location	19900754 ~ 19900857 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023750
TCTGAATTGATGATTCTGGCTTTAATTAGTATAGCCTGTTTTAGTGATCACATCAATTCTTTACAGGCTATGCTAATCTATGCCAGAATTAGCAATGCATGTGG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000083870

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00023750	True	104	miRNA	0.36	1	19900754	19900857

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_012035	fmn2a	coding	downstream	72249	19753559 ~ 19828505 (-)
XLOC_012034	reep3a	coding	downstream	274397	19607387 ~ 19626357 (-)
XLOC_012033	cyp26c1	coding	downstream	365426	19522856 ~ 19535328 (-)
XLOC_012032	dicer1	coding	downstream	434435	19419989 ~ 19466319 (-)
XLOC_012031	gsc	coding	downstream	555233	19343015 ~ 19345521 (-)
XLOC_012038	NA	coding	upstream	66309	19967166 ~ 19972044 (-)
XLOC_012039	ryr2b	coding	upstream	108275	20009132 ~ 20118244 (-)
XLOC_012040	actn2b	coding	upstream	221162	20122019 ~ 20143946 (-)
XLOC_012041	p4ha1b	coding	upstream	243769	20144626 ~ 20167236 (-)
XLOC_012042	ecd	coding	upstream	287847	20188704 ~ 20202725 (-)
XLOC_012030	NA	non-coding	downstream	502569	19230734 ~ 19398185 (-)
XLOC_012025	BX510991.1	non-coding	downstream	1549909	18350726 ~ 18350845 (-)
XLOC_012024	BX465857.2	non-coding	downstream	1616691	18283949 ~ 18284063 (-)
XLOC_012023	NA	non-coding	downstream	1718196	18148782 ~ 18182558 (-)
XLOC_012022	NA	non-coding	downstream	1870497	18025736 ~ 18030257 (-)
XLOC_012049	NA	non-coding	upstream	709619	20610476 ~ 20611884 (-)
XLOC_012051	NA	non-coding	upstream	769541	20670398 ~ 20673891 (-)
XLOC_012054	BX927186.1	non-coding	upstream	802322	20703179 ~ 20703297 (-)
XLOC_012055	NA	non-coding	upstream	999733	20900590 ~ 20923528 (-)

Expression

Co-expression Network