XLOC_012041 (p4ha1b)


Basic Information

Item Value
gene id XLOC_012041
gene name p4ha1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 20144626 ~ 20167236 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023755
GCAACGCGCATGCTCAGTACGGATTTCCACCTGGTTCCATGAGTTTGGGAGAGTGTGTGAGACTCCGCACGTAGCCTGGTGGAATCCCTGCCGCCAGATGACGAGGAAAAGTGCGGTTCAGCCTCCAGATAAAGTCCAGCTGCAGACCAGAAGCATCGTAAACACAGCAGAGTCCTCCGTTCATGCTGAGCTCCTTATCAGCAGCACTAGAGCAACATCTGAAGCGATTCACGACTTCTCTGCGCGAGGTGACAGCCTGAAAGGATGATGTTGGCTTGGTTCCTGTTGAGTTTCCTCTTCCACTTCCTGTATGCCCACAATGACTTTTTCACTTCCACAGGTCAGATGACAGACCTGCTGTACGCTGAGAAGGATCTGGTGACATCTCTCAAAGAATACATCAAACAAGAAGAGAACAGACTAGAGCAGGTTAAAGAATGGGCAGATAAACTGGACTCATTGACGATCACCGCCACGCAGGACCCCGAGGGATTCTTGGGGCACCCGGTCAATGCTTTTAAACTGATGAAGAGACTCAACAGTGAGTGGAGCGACCTGGAGAACCTGGTGCTGAAAGACACCACCAATGgattTATCTCCAATCTGACAGTCCAGAGACAGTACTTCCCAACAGATGAGGACCAGACAGGAGCAGCCAAAGCTTTGCTTAGATTACAGGACACATACCAGCTGTCTGCCAACGCCATCTCTAGCGGAGACCTGCCTGGTGTTGTACACAAGAGTCGAATGACAGTGGAGGACTGCTATGAGCTGGGGAAGATTGCATACTCTGATGCGGATTACTATCACACTGAGCTCTGGATGGCCCAGGCTCTCTCACAGCTAGACGAAGGAGAGGAATCACCCATAGACAAGGTCACAGTCATGGACTACCTGAGTTATGCCATCTACCAGCAGGGGGAACTAGACCGAGCCCTCGAACTCACCAAGAGGATGCTGAAGCTCgACCCCAATCACCACAGGGCCAATGGGAACCTAAAGTACTTTGAGTTCCAGCTGGAGAAGCAAAGAAAAGCTGAGAAtgagaaaaaagaagaagatcAAAAAAGAGTGCTGGACAAGCGTGATGCTCAGAGGAAACGCTCCAAAGATCCTTTGCCAGAGAGGAAGAAATATGAAAGGCTGTGCAGAGGAGAGGGAATAAAACTGACACCTCGTAGACAAAGCCGCCTGTTTTGCCGTTACTCCAACAATAACCGTAATCCACGTCTACTTTTGGCTCCGGTGAAGCAGGAAGATGAGTGGGACCGGCCGCGGATTGTCCGTTATCATGAAATCATCTCTGATAGTGAGATCGAGACTGTGAAGGAGATGGCAAAACCCAGACTAAAGCGAGCCACTGTGCACGATCCCATTACGGGAAAACTCACCACTGCCCAGTACAGAGTCTCCAAGAGCGCTTGGCTGTCTGGATATGAACATTCTACCATTGAAAGGATTAACCAGCGTATTGAGGATGTAACAGGTCTGGAAATGGACACAGCAGAAGAGCTGCAGGTTGCAAATTATGGAGTTGGGGGTCAGTACGAACCTCATTTTGACTTCGGAAGAAAAGACGAGCCAGATGCCTTTAAAGAACTGGGTACAGGAAACAGAATCGCCACATGGCTCTTTTACATGAGTGACGTTTCAGCAGGGGGCGCTACAGTCTTCACGGATGTAGGAGCAGCAGTCTGGCCTAAAAAGGGTACAGCTGTATTCTGGTATAACCTTTTTCCTAGTGGAGAAGGAGATTACAGCACAAGACATGCTGCATGTCCAGTATTAGTGGGCAACAAATGGGTATCGAACAAATGGATACATGAACGAGGTCAAGAATTCAGACGGCCCTGTGCATTATCTGAGGTGGAATGATCACTTTTTATCTCAATTTCTTTTTGTGTCAGTATGGGATGAGTGTCTGAGCTAGGAGCGAATGTTCAATCTATGCAttgcatttgttgttgttgtgcctTTCTGCCCAAATAATAGTGTTCTGGTCAGGATATCCACTGACTGTTCAAACCATGACTATGCATAGATCCAATCAAgcgtttttattatatttgaggTATTTATTTATGGTTGAATTTGgactttgtgtgttttgtttgtatttccCGGCTTATCATACACTCCAGCATACCTCCGTTTTGAGACGTTACTTTTGTATTTCATGAAAACCACTGAACACTCCATACAACTTAATATAATTGTCATCATAGCAAACTGCAAGACCAAAAACATGTTACAAAAATGTTTcatgaaactttttttaaagaattaccAAAGAGTATTTTCATTAATCCTGAGGCAAATGCAACATTTGTctttttatgtgtgtgaatggaaatgtttttaaGGTTGATAGTTTTCTACAGAAATAAATTCTATGCCAtcagtttcatttgtttttttttttggctcactTTTTATAAAATCTGACAAAACTGTAAAATGCTAATGAGTGCACATGAGGTCATTCATTGTTAGGAACAGGTCATGGTTTTTTGACTGaataatttaacttttatttcaaaacattagCAGTGTAACAATTTGAGTGAATCTAAGTTTACTAACAATAATTCTTTCCTCCCCAAGACTGTACAAAACCTAAAACTCAAACATTTTACAGCTTCATttgtaaatgataaaatattaatctTGTCATGTAATGAATATTGATTCTGATGCACCTATTAGTTTACCATCCCCTCTCCCttacttccattcattcattcattttcttgtcggcttagtccctttgttaatctggggtcgccacagaggaatgaaccgccaacttatccagtacatttttacgcagctgatgcccttccagccgcaacccatctctgggaaacatccacacacacatacacacacacacgcatggacaatttagcttacccaattcacttgtaccgcatgtctttggactgtgggggaaactggagcacccgaaggaaacccacacgaacgccgggaggacatgcaaactccacacagaaacgccaactgagccgaggatcgaaccagcgaccttcttgctgtgaggcgacagcactacctactgcgccactgcgtcgcccgccTTTACTtccatttattctttatttttgggtgaactatccttttaggtTTACAGTTGTCAAGAAAATGAAGGGTGGTTCAAAACCACccgatttattaaatgaaatggtCAAATCCATTTGGAGAATGGAAGTGGAATCAAGAAGAAGAGTTTAGGGGTGCTTTTCcaaaaatatttgtgtactgtacaAATATGAATGAAAGTATAGGTAAAATCTCACCTGCAGTAAGCCAGTCTGGACTATGCAAGTGTACTACAGCCTTTAATATCATACAATTACAGTTGGgtgaattactgtaaatatatatttttaaatgtgtggacTGTTCAAATATGAATGGAAATAAGGGTAATATCTCACCTGTAGTAAGCCAGTCTGGCCTCTGTGAATTCAAACTCACTTTATTAGCATTtaactaaataaagcacatgaggtgtacccgaGGTGATTGTCATagtttttctgttgttcagctgtgagaaatagaagcaaATTCTAAAGTAGAAATTTCAGTTTTTGGTAGGGACAAAAACTTGCGTCTGTTGATGTGAGGAtgtgtcaatctggcaacctgcacttgcgtggAGTCGTTAGAGGAGCAGCCAAgtgtaaaagtgttttaaacttggagtgcaatacctagttcaaccactgggtgtcaaacataCTGCTAATTTTACTAATTCCATTCAAGAAGTGAAACTTCTGTGGCACTGCTCAGGTGGCCTTCAGCTCTTCTGCATTGTTGGGTCTGGCCTATTACATCTTTCTCTTTACAATACCCTACAGATTTTTTTCTGGCCAATTAAGAATAGTGATATATACCATGGTTCTTCAATCAGGTACTGGTAGCTTTGGCACTGTGTGCAGGTACCAAGTTCTGTTGGAAAATGAAATCTGCATCTCCTTAATGCCCTTCACAAGGTGTTGTTCAGCAGCAGGAGTATAGAGCTGGTATAGAGCTGCATTGACCTTGGACCTCAGAAAACACAGTGGAGCAACACCAGCACATGATATGCACACCAAACCATCCCTGACTGTGAAACTACTGTACATCAATTGACGTGGATTTTGTGCGTCTTCTCTTTTTCTTCAGACTCTGGGACCCTGATTTCCAGAGGAAATGCAAAATTGACTTTCACCAGAGAACTTTGGAGCTCTTGGCAGCAGTTCAGCCTTTAGCCCAGGCAAGATGCTTCTCATGCTCTTGCATTTGCCTGTGCATAGTGTCTTCAAGCACTGACTCCAGCTGCAGTCCATTCTTGGTGAATCTCTCCCACATTTTTGAAAGGGTTTTGTTTCACATTTCTCTTCAGGGTACTGTTTTCCATTTTGCTTGTACACTTTTCTCTACCACATTTTCCTTCCGTTCGCCTCTCTATCAGTGTGCTTGGACACAGAACTCTTTGAACAGCCAGCCTCTTTTGCAATTACCTTTGGTCTTAGGGTCTTGCCCTCCTTGTGCAAGGTGTCAATGGTTGTCTTTTGGTCAACTGTCCAATCAGCCATCTTCCCTATGATTGTGTAGCCTACTGTATAGACTGAGAGACCATTTAAAGGCCTTTGCAGGTGTTTTGAGTTAATTAGCTGATTACAGTGTGGCACCAGGTGTGTTCAGAACTGAACCGTTTCACAATATTCTATTTTGTGAGATACTGAATTTGGGCTTTTCATAGCTGTgatcaaaatgaaaagaaataaacacttgaaatatatcAGTATGTGTGAAATGAATGTATACATTATGCAAGTTTCACTTCTTGAATAGAATTATTCATtttgcttcggcttagtcctttatttatcaggggtcccaacagcgtaatgaaccgccaactattccactatatgttttacgcagcggatgcccttcacagccttaacccagtattgggaaacacccatacactcacattcacacgaacactcatacactatgaccaatttagttcatttaagAGTCAAGGAATCGACTCTTTTGGAGTCGACTCCCCAGAAGAGTTATTTATTCGCCTGTGCTAGTGCACAATGTAGAGGTGTTTTGTGAAGTTTTTGTTACTAAATTTAGAAAACGTTTCGT
>TCONS_00023756
CTGGTTCCATGAGTTTGGGAGAGTGTGTGAGACTCCGCACGTAGCCTGGTGGAATCCCTGCCGCCAGATGACGAGGAAAAGTGCGGTTCAGCCTCCAGATAAAGTCCAGCTGCAGACCAGAAGCATCGTAAACACAGCAGAGTCCTCCGTTCATGCTGAGCTCCTTATCAGCAGCACTAGAGCAACATCTGAAGCGATTCACGACTTCTCTGCGCGAGGTGACAGCCTGAAAGGATGATGTTGGCTTGGTTCCTGTTGAGTTTCCTCTTCCACTTCCTGTATGCCCACAATGACTTTTTCACTTCCACAGGTCAGATGACAGACCTGCTGTACGCTGAGAAGGATCTGGTGACATCTCTCAAAGAATACATCAAACAAGAAGAGAACAGACTAGAGCAGGTTAAAGAATGGGCAGATAAACTGGACTCATTGACGATCACCGCCACGCAGGACCCCGAGGGATTCTTGGGGCACCCGGTCAATGCTTTTAAACTGATGAAGAGACTCAACAGTGAGTGGAGCGACCTGGAGAACCTGGTGCTGAAAGACACCACCAATGgattTATCTCCAATCTGACAGTCCAGAGACAGTACTTCCCAACAGATGAGGACCAGACAGGAGCAGCCAAAGCTTTGCTTAGATTACAGGACACATACCAGCTGTCTGCCAACGCCATCTCTAGCGGAGACCTGCCTGGTGTTGTACACAAGAGTCGAATGACAGTGGAGGACTGCTATGAGCTGGGGAAGATTGCATACTCTGATGCGGATTACTATCACACTGAGCTCTGGATGGCCCAGGCTCTCTCACAGCTAGACGAAGGAGAGGAATCACCCATAGACAAGGTCACAGTCATGGACTACCTGAGTTATGCCATCTACCAGCAGGGGGAACTAGACCGAGCCCTCGAACTCACCAAGAGGATGCTGAAGCTCgACCCCAATCACCACAGGGCCAATGGGAACCTAAAGTACTTTGAGTTCCAGCTGGAGAAGCAAAGAAAAGCTGAGAAtgagaaaaaagaagaagatcAAAAAAGAGTGCTGGACAAGCGTGATGCTCAGAGGAAACGCTCCAAAGATCCTTTGCCAGAGAGGAAGAAATATGAAAGGCTGTGCAGAGGAGAGGGAATAAAACTGACACCTCGTAGACAAAGCCGCCTGTTTTGCCGTTACTCCAACAATAACCGTAATCCACGTCTACTTTTGGCTCCGGTGAAGCAGGAAGATGAGTGGGACCGGCCGCGGATTGTCCGTTATCATGAAATCATCTCTGATAGTGAGATCGAGACTGTGAAGGAGATGGCAAAACCCAGACTCCGTAGGGCTACTATATCCAATCCCATCACGGGCGTGCTCGAGACCGCCCCCTACAGGATCAGCAAGAGCGCTTGGCTGTCTGGATATGAACATTCTACCATTGAAAGGATTAACCAGCGTATTGAGGATGTAACAGGTCTGGAAATGGACACAGCAGAAGAGCTGCAGGTTGCAAATTATGGAGTTGGGGGTCAGTACGAACCTCATTTTGACTTCGGAAGAAAAGACGAGCCAGATGCCTTTAAAGAACTGGGTACAGGAAACAGAATCGCCACATGGCTCTTTTACATGAGTGACGTTTCAGCAGGGGGCGCTACAGTCTTCACGGATGTAGGAGCAGCAGTCTGGCCTAAAAAGGGTACAGCTGTATTCTGGTATAACCTTTTTCCTAGTGGAGAAGGAGATTACAGCACAAGACATGCTGCATGTCCAGTATTAGTGGGCAACAAATGGGTATCGAACAAATGGATACATGAACGAGGTCAAGAATTCAGACGGCCCTGTGCATTATCTGAGGTGGAATGATCACTTTTTATCTCAATTTCTTTTTGTGTCAGTATGGGATGAGTGTCTGAGCTAGGAGCGAATGTTCAATCTATGCAttgcatttgttgttgttgtgcctTTCTGCCCAAATAATAGTGTTCTGGTCAGGATATCCACTGACTGTTCAAACCATGACTATGCATAGATCCAATCAAgcgtttttattatatttgaggTATTTATTTATGGTTGAATTTGgactttgtgtgttttgtttgtatttccCGGCTTATCATACACTCCAGCATACCTCCGTTTTGAGACGTTACTTTTGTATTTCATGAAAACCACTGAACACTCCATACAACTTAATATAATTGTCATCATAGCAAACTGCAAGACCAAAAACATGTTACAAAAATGTTTcatgaaactttttttaaagaattaccAAAGAGTATTTTCATTAATCCTGAGGCAAATGCAACATTTGTctttttatgtgtgtgaatggaaatgtttttaaGGTTGATAGTTTTCTACAGAAATAAATTCTATGCCAtca

Function

symbol description
p4ha1b Predicted to enable procollagen-proline 4-dioxygenase activity. Predicted to be involved in peptidyl-proline hydroxylation to 4-hydroxy-L-proline. Predicted to be located in endoplasmic reticulum lumen. Predicted to be active in endoplasmic reticulum. Orthologous to human P4HA1 (prolyl 4-hydroxylase subunit alpha 1).

GO:

id name namespace
GO:0018401 peptidyl-proline hydroxylation to 4-hydroxy-L-proline biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen molecular_function
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0005506 iron ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0051213 dioxygenase activity molecular_function
GO:0004656 procollagen-proline 4-dioxygenase activity molecular_function
GO:0031418 L-ascorbic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4089 Predicted to enable procollagen-proline 4-dioxygenase activity. Predicted to be involved in peptidyl-proline hydroxylation to 4-hydroxy-L-proline. Predicted to be located in endoplasmic reticulum lumen. Predicted to be active in endoplasmic reticulum. Orthologous to human P4HA1 (prolyl 4-hydroxylase subunit alpha 1).

Ensembl:

ensembl_id ENSDARG00000071082

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023755 False 5178 mRNA 0.43 15 20144626 20167236
TCONS_00023756 True 2371 mRNA 0.46 15 20147403 20167206

Neighbor

gene id symbol gene type direction distance location
XLOC_012040 actn2b coding downstream 680 20122019 ~ 20143946 (-)
XLOC_012039 ryr2b coding downstream 26382 20009132 ~ 20118244 (-)
XLOC_012038 NA coding downstream 172582 19967166 ~ 19972044 (-)
XLOC_012036 chrm3a coding downstream 180908 19831676 ~ 19963718 (-)
XLOC_012037 dre-mir-2187 coding downstream 243769 19900754 ~ 19900857 (-)
XLOC_012042 ecd coding upstream 21468 20188704 ~ 20202725 (-)
XLOC_012043 mgmt coding upstream 46977 20214213 ~ 20218391 (-)
XLOC_012044 ebf3b coding upstream 51917 20219153 ~ 20229812 (-)
XLOC_012045 bnip4 coding upstream 64565 20231801 ~ 20236309 (-)
XLOC_012046 add3b coding upstream 80941 20248177 ~ 20287588 (-)
XLOC_012030 NA non-coding downstream 746441 19230734 ~ 19398185 (-)
XLOC_012025 BX510991.1 non-coding downstream 1793781 18350726 ~ 18350845 (-)
XLOC_012024 BX465857.2 non-coding downstream 1860563 18283949 ~ 18284063 (-)
XLOC_012049 NA non-coding upstream 443240 20610476 ~ 20611884 (-)
XLOC_012051 NA non-coding upstream 503162 20670398 ~ 20673891 (-)
XLOC_012054 BX927186.1 non-coding upstream 535943 20703179 ~ 20703297 (-)
XLOC_012055 NA non-coding upstream 733354 20900590 ~ 20923528 (-)
XLOC_012061 AL929290.1 non-coding upstream 963025 21130261 ~ 21130377 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000106_02381743_02392106 P4HA1B coding CI01000106 null 2381149 ~ 2392106 (-)