G384662


Basic Information

Item Value
gene id G384662
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000193
NCBI id null
chromosome length 643562
location 387853 ~ 393121 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU439932
CCCAAACGTATGAACAGTAATGTCGGGTCACTCCAGCAATAAATAAATAACCTAAATAAACTCAAAAAGAATCATCTGATTGCTGGTGTTTTTTTTCTCACCAGGTATCCTCTCTGTAGCTGTGATGGTGTTGTTGTGTGTTGAGCTCTCCTCTGCTGTGCTGGTCAGCAGTGTTGCTTCCCCATCCTTGGCTGGTCCGCTGTTTCGGACCGGCGTTTTCTTCTCCTGTGCCTGCTGGCGGGCCTCACTGGGCTGGGGCTTCCCTCTCCCCCTCTCGCCAGAATTAGTTCTGCCTGTCAGCCTGCGGGTTTTGCCCTTACCCTGCTCCTGAGGGCTGCCGGTGCACGTCCTGCCACCGCTATGGCCGCCCTGGATCTCCTCTTTCACCCTGGGGACGCCGTCCTTGCATCGGCTGGTGACTTTCATGCTCTCCCTTTGGGGTTTGGAGGACGACGCCTTGCCCACACTCGAGCGAGAAGGTTTGACCACCTTCACGGGGCTTTTGGGGTCCTCCATGCCACTCCACTTCTCTCCGGACGAGACTGAAGAAAAGCCCAAAGGGCTCTGGGTTGAAGGTTTCTAGATTCACAAATGTGTGGTAGATCAGCAGTACATGCTGAGAACGATCATAAGGAGCGGTGACGGTTTGGCGTCGCGTTAAACGCCATGTATCCCGGCGCTGATGTTGTTGTTGTTGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU439932 True 698 lncRNA 0.54 2 387853 393121

Neighbor

gene id symbol gene type direction distance location
CI01000193_00380544_00386196 GPX7 coding downstream 1657 380295 ~ 386196 (-)
CI01000193_00289289_00334600 SLC1A7A, SLC1A7B, SLC1A7 coding downstream 53253 287342 ~ 334600 (-)
CI01000193_00127434_00155049 NA coding downstream 232591 126958 ~ 155262 (-)
CI01000193_00099572_00117203 NA coding downstream 269132 99471 ~ 118721 (-)
CI01000193_00088221_00095804 TGM2A coding downstream 291406 87952 ~ 96447 (-)
CI01000193_00575632_00581576 NA coding upstream 180425 573546 ~ 581576 (-)
CI01000193_00586342_00606202 PFKFB2A, PFKFB2B coding upstream 193179 584798 ~ 606202 (-)
CI01000193_00621577_00638948 NA coding upstream 228321 616440 ~ 638990 (-)
G384613 NA non-coding downstream 110982 275239 ~ 276871 (-)
G384555 NA non-coding downstream 356271 30418 ~ 31582 (-)
G384669 NA non-coding upstream 42818 435939 ~ 441404 (-)
G384676 NA non-coding upstream 57314 450435 ~ 450761 (-)
G384715 NA non-coding upstream 131336 524457 ~ 524757 (-)
G384717 NA non-coding upstream 133873 526994 ~ 527223 (-)
G384718 NA non-coding upstream 134786 527907 ~ 528113 (-)

Expression


Co-expression Network