G384613


Basic Information

Item Value
gene id G384613
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000193
NCBI id null
chromosome length 643562
location 275239 ~ 276871 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU439881
CTGTGGCAGAAACCGAGCTGATCCTATTGCTCTGCAGATGGAGTTCAGCTTCAGTTGATTGTTGGACAGGTAGATCTCCCTCAGTGAGCTCATTCCCAGCAGAGCTCCTTCCGGTATCTCAGTCATCTGGTTGTCCTTCACCTTCAGAATCTGGAGGCTCTTGGGAAGGCCCAATGGCAGTGCCTGTAGTTTGTTTCCCGACAGATCCAAGGTCTCCAGAATCCTGAGCTTCCTGAAGGCCTCTCTGTGGAGCTTGGCACTGGTGAGGCGGTTGTAACTGAGGTTGAGCTCCGTGAGGGTGTAAAGCGTGATCAGATCATTGCGTCCAATCTCGCTGATGAGGTTGTGGAGCAGCATGAGGGTTTTTGCACGGCGTGGAAGACCACGGGGAACTCGCTCTAGGAGGTTGTTGTACATGTGGACGGTGTGGAGACGTTTGAGGCCCTGGAAGGCGGCCGGATGGATGGAGCGGGAGCGGAGGTGGTTGTTGTGGAGGAGCAGGTACTCCAAGTTTCGGATGGGCGTCAGAGCGTTGACTGTGATGCTCTGGATGTAATTCTTCTCCAGGTGAAGCAGGACGATATTGCGGGGCAGCCCGAGGGGAACCGCGGTCAAGTTGTTATTGGACAAATCCAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU439881 True 636 lncRNA 0.55 2 275239 276871

Neighbor

gene id symbol gene type direction distance location
CI01000193_00127434_00155049 NA coding downstream 119977 126958 ~ 155262 (-)
CI01000193_00099572_00117203 NA coding downstream 156518 99471 ~ 118721 (-)
CI01000193_00088221_00095804 TGM2A coding downstream 178792 87952 ~ 96447 (-)
CI01000193_00074853_00078832 NA coding downstream 196292 74449 ~ 78947 (-)
CI01000193_00063306_00069976 NA coding downstream 205237 63030 ~ 70002 (-)
CI01000193_00289289_00334600 SLC1A7A, SLC1A7B, SLC1A7 coding upstream 10471 287342 ~ 334600 (-)
CI01000193_00380544_00386196 GPX7 coding upstream 103424 380295 ~ 386196 (-)
CI01000193_00575632_00581576 NA coding upstream 296675 573546 ~ 581576 (-)
CI01000193_00586342_00606202 PFKFB2A, PFKFB2B coding upstream 309429 584798 ~ 606202 (-)
CI01000193_00621577_00638948 NA coding upstream 344571 616440 ~ 638990 (-)
G384555 NA non-coding downstream 243657 30418 ~ 31582 (-)
G384662 NA non-coding upstream 110982 387853 ~ 393121 (-)
G384669 NA non-coding upstream 159068 435939 ~ 441404 (-)
G384676 NA non-coding upstream 173564 450435 ~ 450761 (-)
G384715 NA non-coding upstream 247586 524457 ~ 524757 (-)
G384717 NA non-coding upstream 250123 526994 ~ 527223 (-)
G384658 NA other upstream 112739 389610 ~ 429293 (-)

Expression


Co-expression Network