XLOC_012198 (yy1a)


Basic Information

Item Value
gene id XLOC_012198
gene name yy1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 30857008 ~ 30863252 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024022
AGTCAATGTGGGACGGAGTTTTGCCTGTTTGTTAGTGGAGAAGGAGGGGAGAGCGAGTCGTTGACTTGACACTGGGCTTGCTTGAAAATTACTTTCGGAAAGCAAGAAAGCCAAGAATGGCGTCGGGCGAGACACTGTACATCGAGGCCGACGGCTCGGAAATGCCGGCCGAGATCGTCGAGCTGCACGAAATCGAAGTTGAGACTATCGAGACCACAGTGGTCGGCGGAGACGACGACGAGCACCAGCCCATGATCGCCCTGCAGCCGCTGGTCACGGACGACCCGAACCACGTTAACCACCAGGAGGTGATTTTAGTGCAAACTCGTGAAGAGGTGGTGGGTTGCGATGACTCGGACCTCCATGCAGACGACAGTTTCGAGGACCAGATCCTCATTCCCGTGCCCGTTCCGGTGGCAGAGGAGGAATATATCGAGCAGACTTTAGTGACCGTGTCTGGCAAGAATCCGTCTGGTAGGATGAAGAAAGGAGGAGGCAGTGGGAAAAGAGTGGTCAAAAAGAGCTTCCTAAACTCCGCTGAAGCGAGCGGACGCAAATGGGAGCAGAAACAAGTGCAGATCAAAACACTGGAGGGGGAGTTTTCCGTCACTATGTGGGCATCGGATGATAAGAAAGATGTTGATCATGAGACAGTGGTGGAGGAGCAGATCATTGGAGAAAACTCTCCTCCAGATTATTCAGAATACATGACAGGCAAGAAACTGCCACCTGGTGGCATACCCGGCATTGACCTGTCAGACCCCAAACAGCTGGCAGAGTTTGCCAGAATGAAGCCTAGGAAAATAAAAGAAGATGATTCTCCAAGGACGATAGCTTGCCCACACAAAGGTTGCACAAAAATGTTTCGGGATAACTCCGCTATGAGGAAGCACTTGCACACCCACGGGCCGCGGGTTCACGTCTGCGCTGAATGTGGGAAGGCGTTTGTGGAAAGTTCCAAGCTAAAACGGCATCAGTTGGTTCATACTGGTGAAAAACCTTTCCAGTGCACATTTGAGGGATGTGGAAAGCGCTTCTCATTGGACTTTAACTTGCGCACACATGTGCGGATTCACACTGGAGACAGACCGTACGTTTGCCCGTTCGATGGCTGTAACAAGAAATTTGCTCAGTCCACCAACCTGAAGTCTCACATTTTGACACACGCGAAAGCTAAGAACAATCAGTGAGATCCCTCGCTGAAGAAAGCTCCAAAAGACTCTGGTCTGACAACAGCTTCCTGCTCCAAAACCCTCTTTGTATGTCGTTTCTAGAAGCGTTCTTTTCTAAGAGAATCTCAGCACACATTTTGATGGGAATTGAAATGTGAACGAGGAACTGACACCAAACTTACCCCGTCAAGCATCTCGTGGTATAGACCTGAATTAAATAACTTCCCGGTTATGAGAGTTTCTTCTTTTGAAGATGTGATTGTTTTCGTGGACCTTCATTCACTTAACAAGACGCTCATTATCCTGAGCCCAaagaagctaaattgtccatctGTGTGTCTGTTTCAGTTTGCAAAGACTGCTTTTTAGATGTCTTCAAAGTGTGCATATTGTACACTTTTTAGAGCGTAGagctgtcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgcgcgcGCGTGTGGGTGTGTGAGTCGTCCCTGAGACTTAAAACCTGTGAATGCTTTTCTTCAAGGAGAATGAGATGTCgttcagcttttctttttcttttcaatgtAAATACTGCTTTTCTTTGTGAGAGGTATTCTGCGCAGGTATCTTGTTTTGTATACCTGTCCTGTACAAATGTTTTGAAATCATGTAGATAATAGAGATGTTGATTAGATTGTGTTTAACCAATTAAACAGTTTTATCCAGCTTCAGGAAGTACTGCTACATACACATGCCTTCTTTTGTAACACGTTAACAATCTTACTCAGTTTGTGGAAAGAcactcttttgttttgttttttaactctcCCTTCAAATTCTCTAATTTATTTGATGATATGGAATAAAGCTAAACTCCTCTGTGCAGTTGCTAAAA

Function

symbol description
yy1a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within brain development; circulatory system development; and positive regulation of gene expression. Predicted to be part of PcG protein complex and transcription regulator complex. Is expressed in several structures, including eye; heart; myotome; notochord posterior region; and pronephros. Human ortholog(s) of this gene implicated in congestive heart failure. Orthologous to human YY1 (YY1 transcription factor).

GO:

id name namespace
GO:0010628 positive regulation of gene expression biological_process
GO:0007507 heart development biological_process
GO:0001525 angiogenesis biological_process
GO:0007420 brain development biological_process
GO:0031519 PcG protein complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005515 protein binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1117 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within brain development; circulatory system development; and positive regulation of gene expression. Predicted to be part of PcG protein complex and transcription regulator complex. Is expressed in several structures, including eye; heart; myotome; notochord posterior region; and pronephros. Human ortholog(s) of this gene implicated in congestive heart failure. Orthologous to human YY1 (YY1 transcription factor).

Ensembl:

ensembl_id ENSDARG00000042796

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024022 True 2041 mRNA 0.46 5 30857008 30863252

Neighbor

gene id symbol gene type direction distance location
XLOC_012197 gdf7 coding downstream 17670 30835076 ~ 30839338 (-)
XLOC_012196 zgc:194392 coding downstream 154597 30700627 ~ 30702411 (-)
XLOC_012195 alkal2b coding downstream 190971 30661348 ~ 30666037 (-)
XLOC_012194 sh3yl1 coding downstream 204270 30604819 ~ 30652738 (-)
XLOC_012193 NA coding downstream 263950 30573572 ~ 30593058 (-)
XLOC_012199 evla coding upstream 34040 30897292 ~ 30975978 (-)
XLOC_012200 eml1 coding upstream 113232 30976484 ~ 31082381 (-)
XLOC_012201 BX571712.1 coding upstream 233074 31096326 ~ 31097541 (-)
XLOC_012202 pkdccb coding upstream 287963 31151215 ~ 31164219 (-)
XLOC_012203 BX571712.2 coding upstream 318698 31181950 ~ 31185243 (-)
XLOC_012190 NA non-coding downstream 447249 30398949 ~ 30409759 (-)
XLOC_012189 NA non-coding downstream 487483 30306215 ~ 30369525 (-)
XLOC_012188 NA non-coding downstream 576295 30278131 ~ 30280713 (-)
XLOC_012186 NA non-coding downstream 774295 30077331 ~ 30082713 (-)
XLOC_012208 BX539317.1 non-coding upstream 521182 31384434 ~ 31384548 (-)
XLOC_012218 NA non-coding upstream 1264645 32127897 ~ 32136128 (-)
XLOC_012219 CR407546.1 non-coding upstream 1382877 32246129 ~ 32246255 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G381334 NA non-coding CI01000189 null 3112727 ~ 3114919 (+)
bowfin (Amia calva) AMCG00000357 yy1a,LOC108411685,LOC108258103,LOC101066055,LOC108425622 coding CM030141.1 CM030141.1 12385408 ~ 12399523 (+)