G381334


Basic Information

Item Value
gene id G381334
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 3112727 ~ 3114919 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU435947
TTTATTCTGTTAAAATGCAATTATTTTTTTTTTTACATTGTTTAAATGCAAGAAAACATAAATTCAAAGGGATAGTTCACCCAAAAATAAAAATGGTCATAGCCTCACCCTCAAGTTGTTCCAAACCTCTATGAATTTCTTTCTTCTACTGAACACGAAAGAAGATATTTTGAATAATTTCAGTAACCAAACAGTTGATTGGACCCCACTGACATCCATTTTTTTCCTTCTCCAAACTATAGAAGTCAATGGGGCTTATCAACTGTTTGGTTACCAACATTCTTCAAAATATCTTTTGTGTTCAACAGAAGAAATTCATACAGGTTTGGAACAACTTGAGAGTGAGTAAATGTCAATTTTCATTTTTGGGTGAACTATCCCTTTAAATCTATAGGGTGTAAGTGAGAAAATTTGTTCAGATTAATAGTTTAATGATTTTTAGGAATCGTTAGTCTGTGATGCACTGCAAGTATTGGCAAAAGCAAGCCGTCTTCATTGCCAATAGTATACTAGCACTTAAAATACTTAAAGCATACATGTGTAATTTCATACAATTTATAACTGAATATTGTGCATATTCATATACAAATTCCGAGTATGGGACATCATACTTAGCCTCACATTACTCACTCATATTCTAAGTTAGGATGTTTTAATATTAACTTGAAGTAATGTAATGTTAGTGTTGTGATTTTTTTTGTTACGGTAACTAAATATAATTATTACAGTTACATGTTATGATTGAAACAAACATACATTTTCAAATTTTACATTCACTGCTGCTTGNNNNNNNNGTCTACTAATGCAATAATACTTTTTGACAATTACCATGAACCAGACCCATATCACTTTCAAGAGATCATTTGTGAAATCAAATGAAATTAAAAGCAAGGATTGTGCAGCTTTAAGTCAATTGAGGGCATTTAGCATACAACAGCATGATAAATTCAGGCTCTTAGCAACTGCACAGGGGAGTTTAGCTTTATTCCATATCATCAAATAAATTAGAGAATTCGATGGAAAATTGTCTTTTCACATACTGAGTAGATTGTTACCGTGTTACAAAAGAAGGCATGTGTATGTAGTAGTACTTCCTGAAGCTGGATAAAACTTTTAATTGGTTAAACACAATCTAATCAACATATCTATTATCTACATGATTTCAAAACATTTATACAGGTCAGGTATACAAAATGAGATACCTGCACAGGATACCTCTCACAAAGAAAAGCTGTATTTACATTGAAAAAGAAAAAAAAGCTGAACGCCAACTCATTCTCCTTGAAGAAAAGCATTCACAGATTTTAAGTCTCAGGGACAATACACGCACGCGCACACACACACACGCACGCACACACACATATTATGACAGCTCTACGCTCTAAAAAGTGTACAATATGCACACTTTGAAGACATCTAAAAAGCAGTCTTTGTCTTTGCAAACCGGTAGAAACAGACACACTGATGGACAATTTGCTTCTTTGGGCTCAGGATAATGAGCATCTTGTATGTGAATGAGGGTCCACAAAAACAATCACATCTTCGAAAGAAGAAATTCTCATAACCGGGAAGTTATTTAATTCAGGTCTATACCATGAGAAGGTTGACGGGATAGTTTGGTATCAGGTCCTCATTCACATTTCAAATCCCATCAAAATGTGTGCTGAGATTCTCTTAGAAAAGAATGGTTCTAGAAACGACATACAAAGTGGGTTTTGGAGCAGGAAGCTGTTGTCAGAGTCTTTAGGGAAACTTTCCTCAGCGAGCGATCTCACTGATTGTTTTTAGCTTTCGCGTGTGTCAAAATGTGAGACTTCAGGTTGGTGGACTGAGCAAATTTCTTGTTACAGCCATCAAACGGGCAAACATACGGTCTGTCTCCAGTGTGAATCCGCACATGTGTGCGCAAGTTAAAGTCCAAAGAAAAGCGCTTTCCACATCCTTCGAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU435947 True 1950 lncRNA 0.35 2 3112727 3114919

Neighbor

gene id symbol gene type direction distance location
CI01000189_03105976_03111686 TPP1 coding upstream 188 3105976 ~ 3112539 (+)
CI01000189_03044058_03087355 LDAH coding upstream 25372 3044058 ~ 3087355 (+)
CI01000189_02989005_03008501 APOB coding upstream 103975 2989005 ~ 3008752 (+)
CI01000189_02914301_02921746 NA coding upstream 190246 2914135 ~ 2922481 (+)
CI01000189_02894819_02909880 NA coding upstream 201680 2893756 ~ 2911047 (+)
CI01000189_03119656_03124409 DEGS2 coding downstream 4737 3119656 ~ 3125073 (+)
CI01000189_03247095_03253475 DISP2 coding downstream 132176 3247095 ~ 3253575 (+)
CI01000189_03263017_03269532 CCDC32 coding downstream 148098 3263017 ~ 3269746 (+)
CI01000189_03273853_03274959 PRLH2R coding downstream 158934 3273853 ~ 3276546 (+)
CI01000189_03344581_03361919 ITPKA coding downstream 229662 3344581 ~ 3362813 (+)
G381349 NA non-coding upstream 20433 3090189 ~ 3092294 (+)
G381311 NA non-coding upstream 126614 2985273 ~ 2986113 (+)
CI01000189_02804072_02818815 LPIN1 non-coding upstream 291966 2804072 ~ 2820761 (+)
G381091 NA non-coding upstream 396313 2716143 ~ 2716414 (+)
G381090 NA non-coding upstream 396938 2715467 ~ 2715789 (+)
G381392 NA non-coding downstream 116107 3231026 ~ 3234682 (+)
G381455 NA non-coding downstream 378725 3493644 ~ 3494342 (+)
G381490 NA non-coding downstream 410838 3525757 ~ 3530119 (+)
G381478 NA non-coding downstream 584300 3699219 ~ 3707304 (+)
CI01000189_03713203_03738458 NA non-coding downstream 597244 3712163 ~ 3738497 (+)
G381120 NA other upstream 271602 2839221 ~ 2841125 (+)
CI01000189_00987665_01058757 PACRG other upstream 2053342 987525 ~ 1059385 (+)
G379799 NA other upstream 2099824 1012546 ~ 1012903 (+)
G379600 NA other upstream 2615819 475615 ~ 496908 (+)
G381491 NA other downstream 510817 3625736 ~ 3626855 (+)
G381655 NA other downstream 1005468 4120387 ~ 4122344 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012198 yy1a coding NC_007128.7 CM002901.2 30857008 ~ 30863252 (-)