CI01000189_03713203_03738458


Basic Information

Item Value
gene id CI01000189_03713203_03738458
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 3712163 ~ 3738497 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000189_03713203_03738458.mRNA
CTATAAAAACTATACAGTTGTTTAATAGATACAATTTTTCATGTAAAATGCCTCCCCCCCTTCCTCTCGTTTTCTGTTTTTTTGTTTTACCCCTGACATGTATGGTTATGTGTACTCTTTTTTGTAAACTATGTGTTGTTCTTGTTAATATTCAATAAAAATAAAAAATAAAAACCATTCATACATACAATCCTGTTTGACCACTTGGCGTCACTGTTGGACCGCTGTATTTAGTAAGAAAATCAGCTGTCCACCAGTGAGAGCGCTGTTTTGTAAATCTCAGTGAGGTGACATCACTTACATTTTATTCGTCCTCTAAAGATTCTAATGAGAGAGAGAAGTGTGTTGTACAATAAATAAATAAATTAATATCATTCTAATATACATGTATACCAGTCTACTTAGCATGTGTCTACACTATCAGAAATTTTTAATGTTAGGTCTCAAAGTGAAAACAAAATGTTTTTTTATTCAACTCCTCAAAAAGAACTATTTAAAAACAATCTGTCAAAAGGCCAATGAAGCATAACTAGGCTGTCTAATTACAGAGCAATAAAGGAGGCTTAGTCCCCAGGATAAAATCTCAATTCAAAACCCAAATCCTCAGAGGTAGAGACTTTAATTAAAGAAGTGATTAGTGGCAAATTATTAAGATGCATGTTTAACGCCCTGATTGGCTGAAGAAATGAACATTTTAAGTGGAATGGAAGGACTCAAACTGATGAGGGAAATATTTGCAGGTAATGAGTGTCAGACTTCACAGATAAGTAACAGCACAGCTTTATTGAATGACGTGGAGATCAGATGGTTCGAAGGAGCAAACTTGGAGACTGGATCGAGGAGGAGGAACAACAGGGACAATGACGTGGAGAACAACACTGGAGCATCAGATCTTCCAAAGGAGATGTTCACCGGAAAAGAAGTGGGCAGCTCAGACAGACCTAGAGCTCTGGTGCCCAGTGGTGTAACGCAAATCTTGGACCCCACCGGAATCGTGAGGCGAGGCATCAGTTACAATCCACAGATGGGATGTCTGGAGGCTGGGACGGTAACTGTGCACTTCTGTGTTGACATAGAAAGACAGTCTTTGAGGCCGTTTCAAGTTCCTCTACAGCTTGCAGGATGCTGGTCACACTGTAGGACAGGAGGATCGCTCAGGGAGTCTGATTGGATCAGCTTTCCCAAAATGAGTGAAGAAGCCAAAGAAAAAAGTAGCTCCAAACCAGCGCACCGTAAAAAGAAAGGAAAGAAGCCAAATCAACAGTCAGACAATGTCACGCGTGTGACAGCTCTCATGTCTCTTGTGGCTATGGTGTTATCCAAGATCACATTGAGTGTCTGAAAGAGAGTGAGATAGATGTTGTGTTGCTGTTAAATTAAA
>TU436197
GTTTTATCTCGGGACGCCAACTCCTGCGAGGACTCCAGATGACGCAATATCTGGATCAACATGCACATTCCCAAATTTCTATATATCCTAATTGTTGTTAATATGTAATTCATTATTTCCAGGAGCTCATTGCTTCTACCTTCAATTAAACTGCTAACAGTGATTGTAAATTAAATTGCCTAAATTATTACATTATTAGCTAACTGCATTCTCTAAATTGTAATGTTGACATGCATTCTCTGTAAAGCCGCTTTGAAACGATATGTATCGTGAAAAGCGCTATACAAATAAATGTGAATTGAATTGAATAATAAAATATATTTAGAGACAATATTCAAAAGCAAAAACTTGAAAGCTATAAAAACTATACAGTTGTTTAATAGATACAATTTTTCATGTAAAATGCCTCCCCCCCTTCCTCTCGTTTTCTGTTTTTTTGTTTTACCCCTGACATGTATGGTTATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000189_03713203_03738458.mRNA False 1381 mRNA 0.40 8 3712518 3738497
TU436197 True 465 lncRNA 0.32 1 3712163 3712627

Neighbor

gene id symbol gene type direction distance location
CI01000189_03687102_03695400 TMEM26A coding upstream 17113 3685658 ~ 3695405 (+)
CI01000189_03675388_03679269 PHYHIPL, PHYHIPLA, PHYHIPLB coding upstream 33019 3675388 ~ 3679499 (+)
CI01000189_03631130_03666137 BICC1A coding upstream 46237 3631086 ~ 3666281 (+)
CI01000189_03624163_03629420 UBE2D4, UBE2D3, UBE2D1, UBE2D4.L, UBE2D1A, UBE2D1B coding upstream 82510 3624163 ~ 3630008 (+)
CI01000189_03617026_03619754 METTL10 coding upstream 92713 3617026 ~ 3619805 (+)
CI01000189_03767615_03770164 NA coding downstream 28358 3766855 ~ 3770400 (+)
CI01000189_03789640_03792201 ANK3A, ANK3 coding downstream 51143 3789640 ~ 3792201 (+)
CI01000189_03794645_03856786 ANK3A, ANK3 coding downstream 56148 3794645 ~ 3856876 (+)
CI01000189_03865371_03880187 CCDC6A, CCDC6, CCDC6B coding downstream 126149 3864646 ~ 3880301 (+)
CI01000189_03884911_03893327 SLC16A9A coding downstream 146414 3884911 ~ 3894579 (+)
G381478 NA non-coding upstream 5214 3699219 ~ 3707304 (+)
G381490 NA non-coding upstream 182399 3525757 ~ 3530119 (+)
G381455 NA non-coding upstream 218176 3493644 ~ 3494342 (+)
G381392 NA non-coding upstream 477836 3231026 ~ 3234682 (+)
G381334 NA non-coding upstream 597599 3112727 ~ 3114919 (+)
G381558 NA non-coding downstream 4816 3743313 ~ 3743744 (+)
G381556 NA non-coding downstream 8303 3746800 ~ 3751955 (+)
G381560 NA non-coding downstream 19442 3757939 ~ 3782973 (+)
G381559 NA non-coding downstream 110456 3848953 ~ 3850342 (+)
G381576 NA non-coding downstream 145032 3883529 ~ 3883775 (+)
G381491 NA other upstream 85663 3625736 ~ 3626855 (+)
G381120 NA other upstream 871393 2839221 ~ 2841125 (+)
CI01000189_00987665_01058757 PACRG other upstream 2653133 987525 ~ 1059385 (+)
G379799 NA other upstream 2699615 1012546 ~ 1012903 (+)
G379600 NA other upstream 3215610 475615 ~ 496908 (+)
G381655 NA other downstream 381890 4120387 ~ 4122344 (+)

Expression


Co-expression Network