CI01000189_03624163_03629420 (UBE2D4, UBE2D3, UBE2D1, UBE2D4.L, UBE2D1A, UBE2D1B)


Basic Information

Item Value
gene id CI01000189_03624163_03629420
gene name UBE2D4, UBE2D3, UBE2D1, UBE2D4.L, UBE2D1A, UBE2D1B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 3624163 ~ 3630008 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000189_03624163_03629420.mRNA
GAGCTACAGGACTTGCAACGGGATCCACCCTCGCAGTGCTCAGCTGGACCACTTGGAGAAGACTTGTTTCACTGGCAAGCGACAATAATGGGCCCAGGTGATAGTCCATATCAAGGAGGGGTTTTTTTCCTCACAATCCATTTCCCGACTGATTATCCCTTTAAACCACCAAAGGTTGCCTTCACAACAAAAATCTACCACCCAAATATCAACAGTAACGGGAGCATCTGTTTGGACATTCTGCGCTCCCAATGGTCACCTGCCCTCACGGTATCCAAAGTTTTATTATCCATATGCTCACTACTTTGTGACCCAAATCCAGATGACCCTTTAGTTCCAGATATTGCACATATCTACAAATCGGACAAAGATAAGTATAACAGACTGGCAAGGGAATGGACTCAGAAGTATGCAATGTAACTGGATGGCAAGATTTTGAAATGGTTGCACATGGACACTATTACTGCACACGGCTCTACAATGCACCTGTACAGAGACAAGACGTTTACCAACAGATGAACCTCCCCCACCACAAAACACACACAAACACACACACACATACTTGTATATGTGGTTTACATGAACTCTCCATAGACATAATGGTAAACATTCTGCATTTTTGGAATTTCAAAAAAACACCGTTTAGTATGTTTTTTTAAGCCATTTGGTTTACGAGGACACAGGAAGTGTCCTTATAAACCATGTTTACGTTGTAATACCCATGTTATTATACACATTTTTGCCCTCATAAACCAAGTATACAAGATATATATATATATATATATATATATATACATATATATATATATATATATATATATATATATACAATATACACAAACACACATACATACGCACAGCTTTATAGAAAATCCTTGTTCAGGAGGTAACTTGTCTCTCTTCACAGAGGCATCCTGGAAAAACACAAAGTCAGTTAACACATAACAAAGAAATATTGTTTTATTTTCAAATGGATTAGCTACATTTTAGTAATTTTATTGTATAGAA

Function

symbol description
ube2d1b Predicted to enable ubiquitin conjugating enzyme activity and ubiquitin protein ligase binding activity. Predicted to be involved in positive regulation of protein ubiquitination; protein K48-linked ubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to be part of ubiquitin ligase complex. Predicted to be active in nucleus. Orthologous to human UBE2D1 (ubiquitin conjugating enzyme E2 D1).
ube2d3 Predicted to enable ubiquitin conjugating enzyme activity and ubiquitin protein ligase binding activity. Predicted to be involved in protein K48-linked ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be part of ubiquitin ligase complex. Predicted to be active in nucleus. Is expressed in myotome. Orthologous to human UBE2D3 (ubiquitin conjugating enzyme E2 D3).
ube2d4 Predicted to enable ubiquitin conjugating enzyme activity and ubiquitin protein ligase binding activity. Predicted to be involved in protein K48-linked ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be part of ubiquitin ligase complex. Predicted to be active in nucleus. Orthologous to human UBE2D4 (ubiquitin conjugating enzyme E2 D4 (putative)).
ube2d1a Predicted to enable ubiquitin conjugating enzyme activity and ubiquitin protein ligase binding activity. Predicted to be involved in protein K48-linked ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be part of ubiquitin ligase complex. Predicted to be active in nucleus. Orthologous to human UBE2D1 (ubiquitin conjugating enzyme E2 D1).
ube2d1 Enables ubiquitin conjugating enzyme activity and ubiquitin protein ligase activity. Involved in positive regulation of protein ubiquitination; protein K48-linked ubiquitination; and ubiquitin-dependent protein catabolic process. Located in cytoplasm. Part of ubiquitin ligase complex.

GO:

id name namespace
GO:0035519 protein K29-linked ubiquitination biological_process

KEGG:

id description
K06689 UBE2D, UBC4, UBC5; ubiquitin-conjugating enzyme E2 D

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000189_03624163_03629420.mRNA True 1008 mRNA 0.37 6 3624163 3630008

Neighbor

gene id symbol gene type direction distance location
CI01000189_03617026_03619754 METTL10 coding upstream 4358 3617026 ~ 3619805 (+)
CI01000189_03573515_03603610 ARHGAP5 coding upstream 20359 3572191 ~ 3603804 (+)
CI01000189_03559325_03563414 NUBPL coding upstream 60559 3559325 ~ 3563604 (+)
CI01000189_03504269_03505449 CINP coding upstream 118618 3504269 ~ 3505545 (+)
CI01000189_03485572_03492384 NA coding upstream 131779 3485572 ~ 3492384 (+)
CI01000189_03631130_03666137 BICC1A coding downstream 1078 3631086 ~ 3666281 (+)
CI01000189_03675388_03679269 PHYHIPL, PHYHIPLA, PHYHIPLB coding downstream 45380 3675388 ~ 3679499 (+)
CI01000189_03687102_03695400 TMEM26A coding downstream 55650 3685658 ~ 3695405 (+)
CI01000189_03713203_03738458 NA coding downstream 82510 3712163 ~ 3738497 (+)
CI01000189_03767615_03770164 NA coding downstream 136847 3766855 ~ 3770400 (+)
G381490 NA non-coding upstream 94044 3525757 ~ 3530119 (+)
G381455 NA non-coding upstream 129821 3493644 ~ 3494342 (+)
G381392 NA non-coding upstream 389481 3231026 ~ 3234682 (+)
G381334 NA non-coding upstream 509244 3112727 ~ 3114919 (+)
G381349 NA non-coding upstream 531869 3090189 ~ 3092294 (+)
G381478 NA non-coding downstream 69211 3699219 ~ 3707304 (+)
G381558 NA non-coding downstream 113305 3743313 ~ 3743744 (+)
G381556 NA non-coding downstream 116792 3746800 ~ 3751955 (+)
G381560 NA non-coding downstream 127931 3757939 ~ 3782973 (+)
G381120 NA other upstream 783038 2839221 ~ 2841125 (+)
CI01000189_00987665_01058757 PACRG other upstream 2564778 987525 ~ 1059385 (+)
G379799 NA other upstream 2611260 1012546 ~ 1012903 (+)
G379600 NA other upstream 3127255 475615 ~ 496908 (+)
G381655 NA other downstream 490379 4120387 ~ 4122344 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location