Gene
RNA
| Item | Value |
|---|---|
| gene id | G381349 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000189 |
| NCBI id | null |
| chromosome length | 4726117 |
| location | 3090189 ~ 3092294 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU435962 | True | 2106 | lncRNA | 0.38 | 1 | 3090189 | 3092294 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000189_03044058_03087355 | LDAH | coding | upstream | 2834 | 3044058 ~ 3087355 (+) |
| CI01000189_02989005_03008501 | APOB | coding | upstream | 81437 | 2989005 ~ 3008752 (+) |
| CI01000189_02914301_02921746 | NA | coding | upstream | 167708 | 2914135 ~ 2922481 (+) |
| CI01000189_02894819_02909880 | NA | coding | upstream | 179142 | 2893756 ~ 2911047 (+) |
| CI01000189_02857867_02877573 | NA | coding | upstream | 211524 | 2857807 ~ 2878665 (+) |
| CI01000189_03105976_03111686 | TPP1 | coding | downstream | 13682 | 3105976 ~ 3112539 (+) |
| CI01000189_03119656_03124409 | DEGS2 | coding | downstream | 27362 | 3119656 ~ 3125073 (+) |
| CI01000189_03247095_03253475 | DISP2 | coding | downstream | 154801 | 3247095 ~ 3253575 (+) |
| CI01000189_03263017_03269532 | CCDC32 | coding | downstream | 170723 | 3263017 ~ 3269746 (+) |
| CI01000189_03273853_03274959 | PRLH2R | coding | downstream | 181559 | 3273853 ~ 3276546 (+) |
| G381311 | NA | non-coding | upstream | 104076 | 2985273 ~ 2986113 (+) |
| CI01000189_02804072_02818815 | LPIN1 | non-coding | upstream | 269428 | 2804072 ~ 2820761 (+) |
| G381091 | NA | non-coding | upstream | 373775 | 2716143 ~ 2716414 (+) |
| G381090 | NA | non-coding | upstream | 374400 | 2715467 ~ 2715789 (+) |
| G381055 | NA | non-coding | upstream | 426244 | 2663678 ~ 2663945 (+) |
| G381334 | NA | non-coding | downstream | 20433 | 3112727 ~ 3114919 (+) |
| G381392 | NA | non-coding | downstream | 138732 | 3231026 ~ 3234682 (+) |
| G381455 | NA | non-coding | downstream | 401350 | 3493644 ~ 3494342 (+) |
| G381490 | NA | non-coding | downstream | 433463 | 3525757 ~ 3530119 (+) |
| G381478 | NA | non-coding | downstream | 606925 | 3699219 ~ 3707304 (+) |
| G381120 | NA | other | upstream | 249064 | 2839221 ~ 2841125 (+) |
| CI01000189_00987665_01058757 | PACRG | other | upstream | 2030804 | 987525 ~ 1059385 (+) |
| G379799 | NA | other | upstream | 2077286 | 1012546 ~ 1012903 (+) |
| G379600 | NA | other | upstream | 2593281 | 475615 ~ 496908 (+) |
| G381491 | NA | other | downstream | 533442 | 3625736 ~ 3626855 (+) |
| G381655 | NA | other | downstream | 1028093 | 4120387 ~ 4122344 (+) |
