CI01000189_02804072_02818815 (LPIN1)


Basic Information

Item Value
gene id CI01000189_02804072_02818815
gene name LPIN1
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 2804072 ~ 2820761 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000189_02804072_02818815.mRNA
ATGTCAGTTGCAGAGGCAGGGTCTGCTACTCACTGCAAGCAGTTTCCACCCTGCTTTAAATACAACGCCAACACAGACAGTCAGAGAACAGTGTGTGAAACGGTAGAGACAGAATACATGAGCGAAGAGCAGCGAACAAACATCAACCGGTCCGGATTCAGCAGCAGTCAGACCATGAACTACGTGGGTCAGTTGGCCGGTCAGGTTTTCGTGCAGGTGAAGGAGCTGTACAGAGGCCTGAACCCTGCCACCCTCTCCGGCTGTATTGATGTCATTGTGGTGCGTCAGCCGGACGGCACTCTGCAGTGCTCGCCTTTTCACGTCCGTTTTGGCAAGATGGGAGTACTGCGCTCACGGGAGAAAGTGGTTGACATTGAGATAAATGGGGAGCCGGTCAGTTTACAAATGAAACTGGGTGAAAATGGAGAGGCATTCTTTGTCAAAGAAACAGAAAGTGATGAGGAGATGGTGCCATCCCACTTGGCTACATCACCCATAATTTCAGAAGGCTCTGCCCTAATGCAGGCCCAAGTGGGAAAAGGCTTGTCCCGTCTGTCTGAGTCTGGAAACGGAACCTCCATTCAAACCCTGGGCCCCATGCAGGCCCCTGGTGACAGTTCAATAATGAAGAAAAGGAGGAAGAGGAGGAGAAAATCTAAAGTAGACAGCATGAAACGAGAGGACAATGGAGACTTTTCAGAAGATGAGGACATGTTTACCATCGACATGAGTTCTGATGATGACACAAAGGCTACAGGCATCAGAGCCATGTCACATGAACCATTTGCTGAGCAGGTGAAAGGAACTGGCAGCACGTACACACAGTCTGAAGGGAACTGGACTGGTGTTCAAAGTACAGGGCTGGAGAAGACATGCCCTTTACCCATTCCCACCAATACGGGATTATCCATTTCCTGCCCTCAACAAACAGCCATGTTCCAGTCCACATACAGTCCAAATAGCTCCTTGCCTTCTACACCCAAAAGTGATTCCGAGTTGCTGGCCAGTCAGAGGGGTAAAGGGAAACCGGACAACCCTGAGATGCTGTGGACATGGGGAGAGCTGCCTCATGCTGCCAAGCCTTCATTCCTGATGCCCCTGTCAGAGCCCATGGTGGTGACCCCAAGATCAATCCCACCATCTGAAAGCACGCACTTCAGAGCCATCACTGGGGATGGAACGGTGGAGTCTCAGGCTAATGATGTGTATGTGCCTAATCTCAGGGCTGGAGAGGCAACATCTGCCCCTGCTGTAGATGTGGAGGCCATCAGTGCAGCCGCCCATCTTATCACAGACCTGGAGGAGGGCCGTCACAGTCCTGGGGCTCATGCCATTAGCAAGACGGACTCTCCATCCAAGAGAAAAGACAAAAGGAGCCGGCACTTGGGATCAGATGGAATATACCTGGATGACATCACAGAGTTGGAGCCTGAGGTGGCAGCCTTGTACTTTCCAAAGAGTGATGGAGCAACTGCTGTGAGGGGTGGGGCAGATCCGAGAAGTGCAAATCAGTCCCCTCAGTCAGTGGGCAGCAGTGGAATGGACAGTGGGGTGGACAGCTTTTCTGACCAGTTAGGAGACTTGCCTCATATTGCCATCTCTCTATGTGGAGGACTGTCAGAAAACAGAGAGATCACTAAAGAGGAATTCGAGGAACGAGCAATATCTTATCAGGAGTTTGCAGATAATCCATCTATCATTGATGATCCCAACCTGGTCGTAAAGATTGGAACTAAGTATTATAACTGGACCACAGCCGCTCCTATCGTACTGGCCGTGCAGGTTTTTCAGAAACCCTTGCCAAAGGCCACAGTTGAGAACATCATGAAGGAGAAGATGCCCAAGAAAGGAGGACGCTGGTGGTTCTCATGGCGGGGCAGAAACAACAGCTCCAAATCGGAATCAGCATCAGACCAGATTGAAGGTGGAGAGGAGTCTATAAGAACAGGAACTGTGAGCAGATTAAAGGATGAATCATCATCCAGTGAAGATGACAGTGGAAGTGCTAAACAGAATCCTGTGAGCAATCAGCCTGAAGTTCTCCACAGCTCTGGAGGCCACTGCTACAGAAAGACTCTTCGTTTGTCCCCAGAACAGCTAGCCAGTCTGCACTTAAAAGATGGACCCAATGATGTGGTCTTCAGCGTCACCACCCAGTACCAAGGCACCTGTCGCTGTGAGGGCACCATTTATCTGTGGAACTGGGATGACAAGATAGTGATTTCAGATATTGATGGCACCATCACAAGGTCTGATACCCTGGGACACATATTACCAACTCTGGGTAAAGACTGGACTCATCAGGGTATTGCCCGACTCTACCACAGAGTCAGCCAGAACGGCTACAAATTTATGTACTGTTCAGCTCGGGCTATTGGCATGGCTGACATGACCCGGGGTTACCTGCACTGGGTTAATGAAAGAGGCACTATGCTACCCATGGGACCTGTGCTGCTTAGTCCTAGTAGTCTGTTCTCTGCATTTCACAGGGAGGTCATTGAGAAGAAGCCAGAAAAGTTTAAAATCGAATGTCTGACCGATATTAAAAATCTGTTCAATCCAAACACAGAACCTTTCTATGCTGCTTTTGGAAACAGGGCAACAGATGTTTATTCATATAAAGAGGTGGGAGTGCCTCTGAACAGAATATTCACTGTGAATCCTAAGGGAGAGCTCATCCAAGAACATGCAAAGACCAACATATCATCTTATGGCCGTCTGTGTGAGGTCGTAGATCATGTCTTCCCTCTTCTGATCAGAGGGAACACCACTGACTTCCCCTGTTCAGACACCTTCAGCCAGTTCACCTTCTGGAGAGAGCAGTTACCAGAGGTAGACAAGCAGGATCAACAAGCTGAGAGCAGCTAAAAGGACATAAAGCGAACATCACCTACAAATTCAGCTCTAACGCTGCACTGCCATAGGTATTACTCTACGCACAAGCCACTTAGCACTTTGCAGACCGCATGCCGCCCTCTGCCTGTTCCTTCATTATTATTTTACTCTTTTAACAAACATTTAACATTTCTTTGTGTTTTAATGTTTTGTTTAACTGCCAATAGGCTGAATCTGGTAGCATATCATGCAGCTCATATTAGGGAATTTTTTTTGTTTGTTTGTTCATTTATGATGGTACAGTTATTTTAAAGTGGCAAATGCGTTATTCATAACCAACATGGCAATTACATTATGCTGTTAATTTTTTTTCCATTGGCTTTGTCTAAGGGTGTAAAGATGTATGAGGGAATACAATTATTTTAGTACATAGTATAAAAATGTTTTTGAACATTTGTCATAAAACATTCAGAGAGAAATTTAAAAGTTTCATAAAAATAAAAAACAATAATAAATAAACTCAGATGTAGGTCTAAAGCCAGCTAGTATATCTCAGGTGTTACAGAATTTTCACAAGGTATTCTTTTGAAACTTAAAGTGACCTTTCATAACAACAACAACAAAAATCAACTATGTTGGTTTTTGCATTTTCTTTGACATCTAAATTACTTTATGACTCCATTTCCTTAAGAACAAAACAACAAATGCAAGTGATTATTACTTAATTTTCATCTTGGATAACTTCTTACCACATACACACTTTACATTTTGCCAAATGTTTATTATTGTATGATAAATTTGCATTCCTTATTATTTGTGTGTATTTTATGTAAAGTACATATCTCTGACCAGCAGAAATGAATCATGCAAAAATTGATTTTGTCATATGTCATACCCGTTCGCATGTAAAAAAAAAACAAAAACAAAAAAACATAAACTACACAAAAGCAAACATCAATGCAAAGAACACTCAGGTCATGAAGTATTTCTTACCTGTATTAATTCCTTCCTATTAATATCATATTTAATACATCTTAATCATTTTTATAAAATATAATTACACACACCTGAGAGAAAAAAAAACATTTTAGCTTATTTCAGTA

Function

symbol description
lpin1 Enables phosphatidate phosphatase activity. Involved in phosphatidic acid metabolic process. Predicted to be located in cytoplasm and nuclear membrane. Predicted to be part of endoplasmic reticulum and transcription regulator complex. Predicted to be active in mitochondrial outer membrane and nucleus. Biomarker of morbid obesity.

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K15728 LPIN; phosphatidate phosphatase LPIN

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000189_02804072_02818815.mRNA False 3938 mRNA 0.44 21 2804072 2819885

Neighbor

gene id symbol gene type direction distance location
CI01000189_02776882_02794674 GREB1 coding upstream 8958 2776230 ~ 2795114 (+)
CI01000189_02671484_02685375 NA coding upstream 118684 2671484 ~ 2685388 (+)
CI01000189_02656411_02656695 NA coding upstream 146958 2656276 ~ 2657114 (+)
CI01000189_02448133_02449127 NA coding upstream 354639 2447989 ~ 2449433 (+)
CI01000189_02153189_02163137 KCTD3 coding upstream 639907 2152125 ~ 2164165 (+)
CI01000189_02857867_02877573 NA coding downstream 37922 2857807 ~ 2878665 (+)
CI01000189_02894819_02909880 NA coding downstream 73871 2893756 ~ 2911047 (+)
CI01000189_02914301_02921746 NA coding downstream 94250 2914135 ~ 2922481 (+)
CI01000189_02989005_03008501 APOB coding downstream 169120 2989005 ~ 3008752 (+)
CI01000189_03044058_03087355 LDAH coding downstream 224173 3044058 ~ 3087355 (+)
G381091 NA non-coding upstream 87658 2716143 ~ 2716414 (+)
G381090 NA non-coding upstream 88283 2715467 ~ 2715789 (+)
G381055 NA non-coding upstream 140127 2663678 ~ 2663945 (+)
G380721 NA non-coding upstream 324195 2401040 ~ 2479877 (+)
G381311 NA non-coding downstream 165388 2985273 ~ 2986113 (+)
G381349 NA non-coding downstream 270304 3090189 ~ 3092294 (+)
G381334 NA non-coding downstream 292842 3112727 ~ 3114919 (+)
G381392 NA non-coding downstream 411141 3231026 ~ 3234682 (+)
G381455 NA non-coding downstream 673759 3493644 ~ 3494342 (+)
CI01000189_00987665_01058757 PACRG other upstream 1744687 987525 ~ 1059385 (+)
G379799 NA other upstream 1791169 1012546 ~ 1012903 (+)
G379600 NA other upstream 2307164 475615 ~ 496908 (+)
G381120 NA other downstream 19336 2839221 ~ 2841125 (+)
G381491 NA other downstream 805851 3625736 ~ 3626855 (+)
G381655 NA other downstream 1300502 4120387 ~ 4122344 (+)
CI01000189_02141495_02151084 PTPREB coding upstream 618682 2141062 ~ 2151735 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location