CI01000189_03485572_03492384


Basic Information

Item Value
gene id CI01000189_03485572_03492384
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 3485572 ~ 3492384 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000189_03485572_03492384.mRNA
GATACCAGGTCATGTGCTCTCTCCAGTGAGTATCAATGTGCAGAACCACTTAAGTAAGTCAGCAGCCACTATAACCATCAAGCACATTGAGATCCCACAGGCCCCTCGTCTGCAGGATATCCTGAATCCACGTGCCGGTGGCCATGTCACAGAGAATGTCTTTAAACAGGAGATCTTCTCAGGCAGAGCTGCAAAAGCAGAACAGCGATGGGTGGATCAGCCCACCAGTATTGACTATGCCCTCAAGCAGGGTCTCAGACCTCCTGACTTCAACGAGCAGGAACCTGAGATCCCTAAACAATCTGTGGCTGAACTTTCCACTCTTCACTATGCAGTTGACAAGTGGAGGAGTGCCTGCAACATCAAGTTGCCCTTGCGGAGCATGACCATCGAGGGCCTAAAAAGGGCTCTTAGTGACCCTAATAACACAGTGCGGCTGGAGGCCATCATAACCTGTGCATCAAGAGCAGTTAATGGACCACAAGAAGAGCTTCACCTTGGCAAAGCAGCTCAACGTAGTAAGGAATGGAAGTTGAAGGTGGAACCACAGGAGCTGCATGCTCTAATTGTCTCAGCCCTTGAGGACCCAGTGAAGAGAGTTCAGATGGCTGCTGCAGTGTGCCTGTATGCCATGAGGACGCCTAACGCACACGCCAGAGACCTACTACGAAGCATGTTAAAACAAGACCCCTCTGACACAGGTGCAGACAGCTGGGTGGCGGCACAGTGCTTGGCGATAGACGGTGATGCAAGTCAAGCTGTCATACAGAGACTCCTGTCACAACACTTCCTCAGAGACGCTCCTTCAGATCAGGAGCAGTCTCTGACGTTACTCTCCAACATCAGCAGCAAGACTGATATTTGCAACAAATTGATACACATGATGTGGAACGACTGGAGCTGTGCTGTTCGTCATGCTGCAGCACTGGCTCTGAGTGAACTGAACGAGGCCAGAGAGATGCACAGTGAGCTGAGGTTACTATCTCTACCCAACAGACACATCACAACATTTATATTCAGTTCATTCTTAACAGACAAACAATATCTCCACAGCGCAAAGCTGGAGGAAGGCCCAACCGCTTGGCGGGTGGAAGCGCTGATCTTAATTGGTCAGCTCAAAATAATGACACCCAAGCTACTGCCCACTTTCCTGCTGTGCTTTAATGATGACTTTGTGACTGTGCGCAAACAAGCTTGCTTGACTGCAGCTTCTCTAATGATGGAAGACCAGTCGATCCTGAATCAGCTAATTAACCTGATGCAGAATGAGCCAATATGGGAGGTGAAAGTGGAAGCAATTAATGCTCTCCAGGAGTTGTTGATGTGGGCTGTACACCATGAGGAAGAGCCCAGTGTGCGCATTGCTGCCTGTGAGGCCCTGAGCACTTCAGACGCAAAGGGCCCTGAGTTACAGCATTTCCTACAAGAGCGTTATGCGCTGGAACCCAATGCTGAGGTGCAGAGGCACATTAAAGGTCTTCTGAAAAAGCATGGATACAGTCTGCAGGGAGATGAAAGCAAGATTCATGAGATAAAGCTCCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000189_03485572_03492384.mRNA True 1543 mRNA 0.50 9 3485572 3492384

Neighbor

gene id symbol gene type direction distance location
CI01000189_03479355_03480905 NA coding upstream 4354 3479355 ~ 3481218 (+)
CI01000189_03344581_03361919 ITPKA coding upstream 122759 3344581 ~ 3362813 (+)
CI01000189_03273853_03274959 PRLH2R coding upstream 209026 3273853 ~ 3276546 (+)
CI01000189_03263017_03269532 CCDC32 coding upstream 215826 3263017 ~ 3269746 (+)
CI01000189_03247095_03253475 DISP2 coding upstream 231997 3247095 ~ 3253575 (+)
CI01000189_03504269_03505449 CINP coding downstream 11885 3504269 ~ 3505545 (+)
CI01000189_03559325_03563414 NUBPL coding downstream 66941 3559325 ~ 3563604 (+)
CI01000189_03573515_03603610 ARHGAP5 coding downstream 79807 3572191 ~ 3603804 (+)
CI01000189_03617026_03619754 METTL10 coding downstream 124642 3617026 ~ 3619805 (+)
CI01000189_03624163_03629420 UBE2D4, UBE2D3, UBE2D1, UBE2D4.L, UBE2D1A, UBE2D1B coding downstream 131779 3624163 ~ 3630008 (+)
G381392 NA non-coding upstream 250890 3231026 ~ 3234682 (+)
G381334 NA non-coding upstream 370653 3112727 ~ 3114919 (+)
G381349 NA non-coding upstream 393278 3090189 ~ 3092294 (+)
G381311 NA non-coding upstream 499459 2985273 ~ 2986113 (+)
CI01000189_02804072_02818815 LPIN1 non-coding upstream 664811 2804072 ~ 2820761 (+)
G381455 NA non-coding downstream 1260 3493644 ~ 3494342 (+)
G381490 NA non-coding downstream 33373 3525757 ~ 3530119 (+)
G381478 NA non-coding downstream 206835 3699219 ~ 3707304 (+)
CI01000189_03713203_03738458 NA non-coding downstream 219779 3712163 ~ 3738497 (+)
G381558 NA non-coding downstream 250929 3743313 ~ 3743744 (+)
G381120 NA other upstream 644447 2839221 ~ 2841125 (+)
CI01000189_00987665_01058757 PACRG other upstream 2426187 987525 ~ 1059385 (+)
G379799 NA other upstream 2472669 1012546 ~ 1012903 (+)
G379600 NA other upstream 2988664 475615 ~ 496908 (+)
G381491 NA other downstream 133352 3625736 ~ 3626855 (+)
G381655 NA other downstream 628003 4120387 ~ 4122344 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_011540 si:dkey-13p1.3 coding NC_007128.7 CM002901.2 31592191 ~ 31605236 (+)