CI01000223_00474988_00494760 (KPNB1, KPNB1.L)


Basic Information

Item Value
gene id CI01000223_00474988_00494760
gene name KPNB1, KPNB1.L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000223
NCBI id null
chromosome length 527161
location 474988 ~ 494777 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000223_00474988_00494760.mRNA
ATCTCGTCGCGTTTGCGCGCGTCAGGATGGAGCTGATCACAATCCTCGAGAAAACCGTGTCTCCAGATCGGAATGAGCTGGAAGCGGCGCAGAAGTTTCTGGAGCAGGCGGCCATCGAGAACCTGCCGACCTTCCTGGTGGAGCTGTCCAAAGTTTTGGCCAATCCCGGGAACACACAGGTGGCACGAGTTGCTGCCGGTCTGCAGGTGAAGAACTCTCTGACGTCGAAGGATCCGGATGTGAAGACGCAGTACCAGCAGAGATGGCTGGCCATCGACGCCAGCGCCCGCAGAGAGATCAAGAACTATGTAAGGACACCCTTCCAGCAGTGTGGTTGGTACACGTCTGCTCGCTCTGTGTGTCGCGTTAATGATGTTGAAGTTCATCTGGTGCTGCAGACTCTGGGTACAGAGACCTATCGGCCGAGCTCAGCATCTCAGTGTGTGGCTGGTATCGCATGCGCAGAGATCCCTGTCAATCAGTGGCCCGAGCTCATCCCTCAGCTGGTGGCCAATGTGACGGACCCCAGCAGCACAGAGCACATGAAGGAGTCCACGCTGGAGGCCATCGGATACATTTGCCAGGACATCGACCCAGAGCACCTTCAGGACAACGCCAACCAGATCCTGACGGCCATCATCCAGGGCATGAGGAAGGAGGAGCCCAGCAACAATGTCAAACTGGCCGCCACTAATGCGCTCCTCAACTCGCTGGAGTTCACAAAAGCCAACTTTGATAAGGAGACTGAGAGACACTTCATCATGCAGGTCGTCTGTGAAGCCACACAGTGTCCGGACACCAGGGTGAGAGTGGCTGCATTACAGAACCTGGTGAAGATCATGTCCTTGTATTATCAGTACATGGAGACATACATGGGCCCTGCGTTGTTTGCTCTGCTCTGTGTTCAGATCACAATAGAGGCCATGAAGAGTGACATTGATGAAGTGGCCTTACAGGGGATTGAGTTCTGGTCCAACGTCTGCGACGAGGAAATGGATCTGGCTATTGAAGCCACTGAGGCCTCTGAACAGGGTCGTCCTCCAGAGCACACAAGCAAGTTTTACGCAAAAGGAGCTCTGCAGTACCTGGTGCCCATCCTAACACAGACGCTCACCAAACAGGTAAAGCTGGTGTCATTGCTGGGTTTTTTCCCAGATGATGAGAATGATGACGATGACGACTGGAACCCGTGTAAGGCTGCTGGCGTGTGTCTGATGCTTTTGGCAACGTGTTGTGAGGACGATGTGGTGCCACACGTGCTGCCCTTCATCAAAGAGCACATCAAACACCCCGACTGGCGCTACCGCGACGCCTCCGTCATGGCCTTCGGCTCCATTCTGGAGGGTCCTGAACTCAACCAGCTCAAACCACTCGTCATTCAGGCCATGCCTACCCTCATTGAGCTGATGAAGGACCCCAGTGTGGTGGTGAGAGACACGACGGCCTGGACGTTGGGACGCATCTGTGATCTGCTCCCTGAGGCCGCCATCAATGAGGTGTATCTGGCCCCTCTGCTCCAGTGCCTGATCGAGGGTCTCGGGGCCGAACCTCGCGTGGCCTCCAACGTCTGCTGGGCTTTCTCTAGTTTGGCTGAAGCTGCATATGAGGCCACAGACGCTGCCGATGATCAGGAAGAGCCCAGCACGTACTGTCTGTCCTCTTCCTTTGAGCTCATTGTCCAGAAACTGCTGGAGACCACAGACAGGCCAGATGGGCATCAGAATAACCTGCGCAGTGCAGCGTATGAGGCTCTGATGGAGATTGTGAAGAACAGTGCAAAGGATTGTTACCCAGCGGTGCAGAAGACCACACTGGTCATCATGGAGCGACTGCAGCAGGTCCTGCAAATGGAGTCTCACATCCAGAGCACGTCAGACAGGATCCAGTTCAATGACCTGCAGTCGCTCCTGTGCGCCACCCTGCAGAACGTCTTGCGGAAGGTGCAGCATCAGGATGCGCTGCAGATTTCAGACGTAGTGATGGCGTCTCTGCTGCGCATGTTTCAGAGCACCGCCGGCTCTGGAGGCGTTCAGGAGGATGCGCTCATGGCCGTCAGCACTTTGGTGGAAGTTTTGGGCAGTGATTTCTTGAAATACATGGAAGCCTTCAAGCCGTTCCTGGTCATCGGGCTGAAGAATTATGCTGAATATCAGGTGTGTCTGGCTGCGGTGGGGCTGGTGTGTGATCTGTGTCGAGCGCTGATGGCCAATATCCTGCCTTACTGTGATGAAATCATGCAGCTGCTGCTGGAAAACCTGGGTAACGAGAATGTCCACAGGTCTGTGAAACCCCAGATCCTGTCTGTCTTTGGTGATATTGCTCTTGCCATTGGAGGGGAATTCAAGAAGTACCTGGACATTGTGCTGGACACGCTGCAGCAGGCCTCGCAGGCACAGGTGGACAAGACAGACTATGATATGGTGGACTATTTGAATGAGCTGAGAGAAGGCTGTCTGGAAGCTTACACTGGGATCATCCAGGGCTTGAAAGGAGACCAGGAGAATGTACACCCCGATGTAATGCTGGTACAACCTCGTGTCGAGTTTATCTTGTCTTTCATTCAACACATTGCTGAGGATGAAGACCGTTCCGACGGAGTTGTTGCCAACGCCGTAGGCCTCATAGGTGACCTGTGTACAACTTTTGGGAAAGATGTGATGAAGCTGGTAGAGGTTCGACCTCAGATCAACGATCTGCTGACTGAAGGCCGGAGGTCCAAGATCACGAAGACCAAGACTTTAGCCACATGGGCCACGAAGGAGCTACGCAAGCTGAAGAGCCAAGCTTGGAAAATGAGTGCCAAATCCATGCGGATACCAATGGACTTGAGCTTAATATGTTAACATGTAGAAGATGCAAA

Function

symbol description
kpnb1 Predicted to enable nuclear import signal receptor activity and nuclear localization sequence binding activity. Predicted to be involved in protein import into nucleus. Predicted to act upstream of or within intracellular protein transport. Predicted to be active in cytoplasm and nucleus. Is expressed in digestive system; nervous system; and neural keel. Orthologous to human KPNB1 (karyopherin subunit beta 1).

GO:

id name namespace
GO:0019894 kinesin binding molecular_function

KEGG:

id description
K14293 KPNB1, IPO1; importin subunit beta-1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000223_00474988_00494760.mRNA True 2860 mRNA 0.54 22 474988 494777

Neighbor

gene id symbol gene type direction distance location
CI01000223_00467276_00471654 UBC12, UBE2M coding upstream 2590 466773 ~ 472398 (+)
CI01000223_00443582_00449163 NA coding upstream 24952 443339 ~ 450036 (+)
CI01000223_00440611_00441315 NM23, NME1, NME2, NME2.S, NME2B.1, NME2.L coding upstream 33569 440432 ~ 441419 (+)
CI01000223_00426488_00432007 NA coding upstream 41544 426205 ~ 433444 (+)
CI01000223_00398156_00405578 MGC84496, PSMB2.L, PSMB2, PSB2 coding upstream 69347 397839 ~ 405641 (+)
CI01000223_00515921_00524694 NA coding downstream 21144 515921 ~ 524795 (+)
G394903 NA non-coding upstream 8280 456779 ~ 466708 (+)
G394891 NA non-coding upstream 87995 386788 ~ 386993 (+)
CI01000223_00375886_00389461 CLSPN non-coding upstream 90067 375654 ~ 391212 (+)
CI01000223_00355374_00356838 NA non-coding upstream 117667 355101 ~ 357321 (+)
G394884 NA non-coding upstream 131687 343075 ~ 343301 (+)
G394821 NA other upstream 329575 141645 ~ 145413 (+)
G394770 NA other upstream 412160 60880 ~ 62828 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014353 kpnb1 coding NC_007130.7 CM002903.2 48024457 ~ 48037702 (+)
bowfin (Amia calva) AMCG00016612 kpnb1 coding CM030122.1 CM030122.1 26086899 ~ 26096008 (+)