AMCG00016612 (kpnb1)


Basic Information

Item Value
gene id AMCG00016612
gene name kpnb1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26086899 ~ 26096008 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016612
CCTACTTTCCTGGTGGAACTATCAAAAGTGCTCGCCAACCCAGGGAACAGCCAGGTGGCTCGTGTGGCGGCGGGTCTGCAGGTGAAGAACTCGCTGACCTCCAAGGATCCGGATGTGAAGAACCAGTACCAGCAGAGATGGCTTGCCATAGATGCCAATGCACGCAGAGAGATCAAGAACTTTgtgttgcagactctggggacAGAGACATACAGGCCCAGCTCTGCCTCCCAGTGTGTGGCTGGGATTGCCTGTGCTGAGATCCCTGTAAACCAGTGGCCTGAGCTCATCCCCCAACTTGTAGCAAATGTCACAGACCCCAACAGCACTGAACACATGAAGGAGTCGACACTGGAGGCCATCGGGTACATCTGCCAGGACATAGACCCAGAGCAGCTGCAGGACAATGCCAATCAGATCCTCACTGCCATCATCCAAGGCATGCGCAAGGAGGAGCCCAGCAACAACGTCAAACTGGCAGCTACCAACGCCCTGCTTAACTCCCTGGAGTTCACCAAAGCCAACTTCGACAAGGAGACGGAAAGACACTTTATTATGCAGGTCGTTTGTGAAGCAACTCAGTGCCCAGACACAAGAGTACGAGTAGCTGCCTTACAGAACCTTGTGAAGATCATGTCCCTGTATTACCAGTATATGGAGACGTACATGGGTCCGGCTCTGTTCGCAATCACAATAGAAGCCATGAAGAGTGACATCGATGAGGTGGCCTTGCAAGGAATTGAGTTCTGGTCCAACGTCTGTGACGAGGAGATGGACCTGGCCATCGAGGCATCTGAGgcctCTGAGCAAGGACGACCTCCAGAGCACACCAGCAAGTTCTATGCTAAAGGAGCCCTGCAGTACCTGGTGCCCATTCTCACACAGACCCTGACCAAACAGGATGAGAATGACGACGATGATGACTGGAACCCCTGCAAGGCGGCAGGCGTGTGCCTCATGCTGCTGGCCACCTGCTGTGAGGACGACGTGGTCCCACACGTGCTGCCCTTCATCAAGGAGCACATCAAGCACCAGGACTGGCGGTACCGCGATGCCTCCGTCATGGCCTTCGGCTCTATCCTGGAGGGGCCCGAGCTCAACCAGCTGAAACCGCTGGTCATCCAGGCCATGCCCACCCTGATAGACCTGATGAAGGACCCCAGCGTGGTCGTCCGGGACACCACTGCCTGGACTGTGGGCAGGATCTGTGAGCTGCTACCTGAAGCCGCCATCAACGAGGTGTACCTGGTGCCCCTGCTGCAGTGTCTCATTGAGGGCCTGGGGGCCGAGCCCAGAGTGGCCTCCAACGTGTGCTGGGCGTTCTCCAGTTTGGCTGAAGCTGCCTATGAAGCCGCTGATGCAACAGATGACCAGGAGGAGCCAGAGACGTATTGCTTGTCGTCCTCCTTTGAGTTGATTGTACAAAAGCTCCTGGAGACCACAGACCGGCCTGATGGGCATCAGAATAACCTGAGGAGTGCGGCATACGAGGCTCTGATGGAGATTGTGAAGAACAGTGCGAAGGACTGCTACCCAGCTGTGCAGAAGACCACCCTGGTCATCATGGAGAGGCTGCAGCAGGTGCTGCAGATGGAGTCTCACATCCAGAGCACCTCTGACAGAATCCAGTTCAACGACCTGCAGTCCCTGCTCTGCGCCACGCTGCAGAATGTGCTGCGCAAGGTGCAGCACCAGGATGCCCTGCAGATCTCGGACGTGGTGATGGCATCGTTACTGCGCATGTTTCAGAGCACCGCTGGCTCTGGGGGGGTGCAGGAGGACGCGCTCATGGCCGTCAGCACGCTGGTGGAAGTTTTGGGCAGTGATTTCTTGAAGTACATGGATGCCTTCAAGCCTTTCCTGGGCATTGGGCTGAAGAATTACGCAGAGTACCAGGTGTGTCTGGCGGCCGTGGGGCTGGTGTGTGACCTGTGCAGAGCCCTGATGTCCAACATCCTGCCTTACTGTGATGAGATCATGCAGCAGCTACTAGAAAACCTGGGGAACGAAAATGTGCACAGGTCTGTGAAGCCCCAGATTCTCTCGGCCTTCGGGGACATTGCTCTGGCCATCGGGGGCGAGTTCAAGAAGTACTTGGAAATCGTGCTGGACACCCTGCAGCAGGCCTCCCAGGCTCAGGTGGACAAGACGGATTATGACATGGTGGACTACCTGAACGAGCTGCGCGAGGGCTGTCTGGAGGCCTACACAGGAATCATCCAGGGGCTAAAGGGAGACCAGGAGAACGTGCATCCCGACGTGATGCTGGTGCAGCCGCGGGTCGAGTTCATCCTGTCCTTCATCCACCACATTGCGGAGGACGAGGACCACTCGGACGGAGTTGTGGCCAACGCTGCTGGCCTTATAGGAGATTTGTGCACAGCCTTCGGTAAGGATGTAATGAAGTTAGTAGAAGTGAGGCCTGTGATCAATGAACTTCTAACTGAAGGGAGGCGGTCAAAGACGAGTAAAACGAAGACCCTCGCCACGTGGGCCACCAAGGAGCTGCGCAAGCTGAAGAACCAGGCT

Function

symbol description
kpnb1 Predicted to enable nuclear import signal receptor activity and nuclear localization sequence binding activity. Predicted to be involved in protein import into nucleus. Predicted to act upstream of or within intracellular protein transport. Predicted to be active in cytoplasm and nucleus. Is expressed in digestive system; nervous system; and neural keel. Orthologous to human KPNB1 (karyopherin subunit beta 1).

NR:

description
PREDICTED: importin subunit beta-1 isoform X2

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006913 nucleocytoplasmic transport biological_process
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K14293 KPNB1, IPO1; importin subunit beta-1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016612 True 2529 mRNA 0.56 19 26086899 26096008

Neighbor

gene id symbol gene type direction distance location
AMCG00016608 npepps,LOC106587691 coding upstream 3635 26056769 ~ 26083264 (+)
AMCG00016609 NA coding upstream 67978 25982957 ~ 26018921 (+)
AMCG00016602 pgap3,LOC107694083,LOC103358570 coding upstream 113128 25961546 ~ 25973771 (+)
AMCG00016605 NA coding upstream 128066 25956131 ~ 25958833 (+)
AMCG00016604 NA coding upstream 153842 25929577 ~ 25933057 (+)
AMCG00016613 NA coding downstream 3364 26099372 ~ 26102713 (+)
AMCG00016611 socs7 coding downstream 26429 26122437 ~ 26134775 (+)
AMCG00016610 NA coding downstream 41768 26137776 ~ 26146976 (+)
AMCG00016621 RPL23,rpl23,rl23 coding downstream 85391 26181399 ~ 26184860 (+)
AMCG00016618 LOC107707532,LOC107675249,LOC103375888 coding downstream 98413 26194421 ~ 26198373 (+)
G14556 NA non-coding upstream 151318 25933951 ~ 25935581 (+)
G14510 NA non-coding upstream 408550 25672259 ~ 25678349 (+)
G14502 NA non-coding upstream 475210 25604639 ~ 25611689 (+)
G14455 NA non-coding upstream 663873 25422443 ~ 25423026 (+)
G14448 NA non-coding upstream 720523 25363896 ~ 25366376 (+)
G14623 NA non-coding downstream 69622 26165630 ~ 26165982 (+)
G14695 NA non-coding downstream 117286 26213294 ~ 26215317 (+)
G14703 NA non-coding downstream 138318 26234326 ~ 26304342 (+)
G14704 NA non-coding downstream 143162 26239170 ~ 26241244 (+)
G14755 NA non-coding downstream 284043 26380051 ~ 26382420 (+)
AMCG00016607 NA other upstream 136723 25940528 ~ 25950176 (+)
AMCG00016598 NA other upstream 327973 25725253 ~ 25758926 (+)
AMCG00016584 NA other upstream 682059 25370296 ~ 25404840 (+)
AMCG00016566 NA other upstream 929438 25150348 ~ 25157461 (+)
G14361 NA other upstream 953020 25133198 ~ 25133879 (+)
AMCG00016625 mllt10,LOC106942732 other downstream 189794 26285802 ~ 26302514 (+)
AMCG00016633 NA other downstream 331331 26427339 ~ 26433656 (+)
AMCG00016640 NA other downstream 393930 26489938 ~ 26499242 (+)
AMCG00016638 krt222 other downstream 431311 26527319 ~ 26548212 (+)
AMCG00016635 NA other downstream 504085 26600093 ~ 26657425 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014353 kpnb1 coding NC_007130.7 CM002903.2 48024457 ~ 48037702 (+)
grasscarp (Ctenopharyngodon idella) CI01000223_00474988_00494760 KPNB1, KPNB1.L coding CI01000223 null 474988 ~ 494777 (+)