XLOC_012271


Basic Information

Item Value
gene id XLOC_012271
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 37768641 ~ 37771340 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024955
GTGAGGCAGGACTGACTTGGAAGCGTTGATGCTAAATGGAAACACATCTAGGTGAGTCAGCCTATTCGCCACAAGGGCCTTGTATAATCCTGAATCAACACAACCTGCTTTAAATAACACTCGGAGAACTAAAAAGAAAGCCAATTACCTTAGACTAAGAGAAATACAATTGCCGCGAGCTATTAGCCTCATTTTCACAACTTTTGGATTTAAGACACCATATACAAAGGCATAACCTGTTTTTGAAGTAATGCTTATGACAAAACATGCTTTCCACACTGTCCTACTTTCAAGATGAAGGTCTCCTTTGTCAGTGTGTCAACCCTGAGTCAACAAGGCTGTCGCTGCTTTACAGACTTCCAGTAGTGCTAATTGACACACTACCATCCTATTGCATAACGTGACCTAATTCTTGCTCAACCTGCAGTGTAAGGGCTATAGAAGGAATTATACGCTGCTGTGAGTCTGATTAGATCTGAGTTTCAAGTGACAATTTTGTTACACCTACAGTAGCATACTTTTAAGTAAGATGAACCTGGCCAATGCCATCATGCAAGATAGTTTAAACAATGTGGCTAATATTGATGCACTTTCTATGATTGGACATTGTTTAGAAtaccaatattatttattttgggatGACAATTCAAACCAAATCTTTATTTCATTCCAAACCTGCACAacttgcaacataggctcattctgaaaacgtagtcctaaaTCAAGGGTGAAAATTttctcttgacattggtggggacatacatcccTAGAGTGCATGCATTGAACATCACAAATTCTgcttcacactttttaaaaacattatttaagtacttaataatattaaataaacacttattaatacaaataacaatcatgtcaagtcaatttacatgattttaatgCAGTCAGGCTTGGAGGAGGTATGAATATAAAGAAATTTAGTAAGGTGTATGAtgcaatttaactgttttatcccGATTAGTGTTTTTCATTCTGATGGAGGCTAAAATCTAAACCGAATTTTGATTAATTACACAGCCTTGGTTAATAGTATTGCAGTGAACTTATAGCGAACTTGACTTGCATGTGTAGGTTACTAAAAGTTGAcggagcatttttttattttgaagttgattaaattattgtttgggatatttcagtaattggtggatattggtgagGACACATTCCCTCAGTCCATACCAATTCTACGTCTTTTCtctttatacatttctgtagatttTTATGTATCCAGAAgttcgtatggctgcatttcgtcttcaaAATGAATGCTATTAAgtggctgactgcttaccttcgtaTGAACTGCTTTCCTGCTGTTTGTTTGTGCAGTTAGCTCGCCTTGTGCattggacttgagacacagagaggagttgaccacgatgatagTTCAAGAGAACGCgtaggacaaaaacagaagccaagtAAGTAAATAAcaagatgagaatgtggtaaaattggaAAACGTGTTAAAAGtcaggcaagggctttttttCTGGTTTCCTTtttaaactgtcggttgggtttagggaaagaggagggtgggtcagtcgatcggtcagtcagtcagtcgatagcggccactggtggatttacacaagaaaagCTGGCACGAATAAAACTAGCaaaaaaaatttgagatctcaaaaagtgtaaacGGTGGCcactggtggattcgcaaaaactgcaataaaaaaaacgtGCCTCCTGCAATGTATTTtgtgatctctagaaatgtatataggggtacattttcagaatgagcctgggttgacaacTTCTTTCTCCTTTGTCATattattttcattctaaaaaaaacacatcaagtACATTACGCCAACTGGAAATATGTTGCAGAGGTTTAGAAATGTTCagtttgggtgaactaaaccCATAACTCATAATCATGTTATTATGAAATAAAGCTAACCAGCCACTTGTTGATTACAGGAACTGTGATAACATTCAAGGACAGCAAAATGAGCCTGAACTCAACAAAAGCAGGTCACGGCACTCTGCACCCTAGTGAGCGGTAATCAGACCAAATCTTGCCTGAGGAACAACAGATGCAGAGGTGCTTTAATCACCAATACACAACACCTGCGGTAAAGAGGCCTagttaacattttacaaaaactcTTGAGAAAGGAAGCACAAGAGATAGGCAGAAAGAAAAGGAGAGAAGCGGGGGGGTGGGGGTCGAGTCTAATTTTCATGAATGAGATATCCAGAAAAAGCATGACGATGGTCTATATTTTCAGGCTGTTGCTGCTTTGGTTTCAAGGTTCTGGGATCTGATTGGATGCAGCTGCAGGAGAGCACCATGGGAATGAAACAGCAGCTGGATTTCATGCACAGCCTTAGAACCTAGAAAAACAaactctttctctctcgctcgctcacaaactctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttattaacaTTTCAAGTAGTGCACCGTGTCCCAGGCTTTTCACAAAGTGCAGTGCTGAAGTATCTGTGTACATGTTACAAACAGATTGTAAACAAATGTAAGCAAATGACTAGCTATGCTTCAAAAGTACGCTACATGTAGCTGAACATCTGACTTGTAAAACTGTAATGATTAATGTCGTAATTGAAAATGTGGAATTCATAAATATACATCTGTGGATGTTCAGATTA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024955 True 2700 lncRNA 0.38 1 37768641 37771340

Neighbor

gene id symbol gene type direction distance location
XLOC_012270 crip2 coding downstream 293952 37445525 ~ 37474689 (-)
XLOC_012268 crip1 coding downstream 373145 37385811 ~ 37395496 (-)
XLOC_012269 CR382330.2 coding downstream 378524 37390003 ~ 37390117 (-)
XLOC_012267 NA coding downstream 403284 37363024 ~ 37365357 (-)
XLOC_012266 si:ch211-180n24.3 coding downstream 455719 37310662 ~ 37312922 (-)
XLOC_012272 zfp36l1a coding upstream 21277 37792617 ~ 37795865 (-)
XLOC_012273 NA coding upstream 251803 38023143 ~ 38026611 (-)
XLOC_012274 pax9 coding upstream 465129 38236469 ~ 38291065 (-)
XLOC_012275 rps6ka5 coding upstream 621849 38393189 ~ 38442362 (-)
XLOC_012276 NA coding upstream 941286 38712626 ~ 38714935 (-)
XLOC_012265 CR382330.1 non-coding downstream 459195 37309329 ~ 37309446 (-)
XLOC_012260 BX571720.1 non-coding downstream 818086 36950438 ~ 36950555 (-)
XLOC_012253 BX649242.1 non-coding downstream 1092764 36673484 ~ 36675877 (-)
XLOC_012280 BX511307.1 non-coding upstream 1215956 38987296 ~ 38987415 (-)
XLOC_012281 BX571670.1 non-coding upstream 1378227 39149567 ~ 39149683 (-)
XLOC_012282 NA non-coding upstream 1729232 39500572 ~ 39547487 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000062_01116786_01123186 NA coding CI01000062 null 1116641 ~ 1123616 (+)