CI01000299_02118245_02120332 (SLITRK1)


Basic Information

Item Value
gene id CI01000299_02118245_02120332
gene name SLITRK1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 2116861 ~ 2121858 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_02118245_02120332.mRNA
TTATAAAATCCCCATCAATCACATACAGACTAGCAGACACACACGAACCCGTTATCTGCTTGTTTTACAAACCAGATATTTTAAGAAAGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGATGTCAGAGACACGCTATAAATTTAATATATGCATTGAGTTTCAATAAATCCACACTTGTTTTAATAGTCAAAGATTTGATGCGTCGATCCTCTGCCTGCATAAAAAAAAAAAAAAGCCAGGAAAAAAAAAAAAAACAATGCAGGCTGATGTAAAAGGGAATACCCAGTGTTCCTGTTGAAATGCACTTATTTTCCAAATCGCATGTCTTAAGAGCTGTGACGTAGCTTATGTGCGCATAGTTCCTATAGTCTTGACGCAGTGTTTGTTGTGACAGTAATAGAAGAAGCTCAGCGCACCGGCTGCACTGTTGCATGCACGTCGAGTAGTTAATTATTTTACCGCATTCAACTGCAGTTCCCCCTCCACACACACACTCTCACACACTCACAGCGGAAAAAAAAGAAACAACGTTCACGCGAACAACACCTGTGCTTTGTGGAATACTTGAGCTTTTCTTTTTCTTTTTCCTATCTAAAACGGGAATATCGTCTGTGAGGACTCTGGAAATGCTGTGTGCTTTAAAGACATTTGGATGGGGGAAACGGAGTGGCTCTACGAAAGCTGTCGGCGTTGTTAGAGAGGAGAAACCCATCCTGGAATGAGACCAATCTAAACCCTTCGACGGCGATTTTTGTGGACATTTCCAACACTTGCCCTGTATGTGGACTGTTTTTTCCCCCCCGCGCGAGCGAGCGAGCGAGCGAGCAAGCAAGCATTCCCTCATCCGATGGATTTTTGCCTTTGCAGCTCAGCAGAGGGTGTTAGATCTGCCAGTGAACACCGGGCTGAAAAGTCCAGAATCTCTCAGCAACCGTCTTTGTGATGCAAAAGCGTTGAACGAAGCCGCCGGAGTCCGAGGAAGGATGCTAAAGATGTAAGAATCTCGGATTAATCTTACAGCGATGTATTGAGATGTGCGCGGTGTGATTTCAGCACCACGGGAGAAAGAACAGCTCCCGCGCCGTGGATATGTGAGAAATGCACAAGGTCAGTGATTTGCGAGCCCGAAAAGCCAAATAATTGAGTTGAAGATGTCATTCTGTAGGCTTTAATATTGTTTTGATGGCATGCGATGGGGAGGTGATGAAAAAGAGGCTTCTTGCTGTCGATTTTTCTCAATCTGGACATAGCGAGCTGAGCATGGATATAATCACAGAGTGTCCCCTGCTTTTTTAGACTGGAGATATATCTCATTTCTCGCCCTCTTGCTGATTGTATTCATGTCTTGATGTCGGGGATGATTGTGTCATATTGAAAATGCTGCTTTGGATTGTGTTGCTGAAGGCGGCTCTTTGTGTAGCTATCGGGAATGTTACAAGGGACGTCTGTAAGGAGCAGATCTGCTCCTGCAATGCAATAGAAGGCGATTTGCACATTGACTGTGAGAAAAGGAGCCTCACAAACCTGCACCATTTGACAGGTCCGAGCTCCCAGTTTTATCACCTCCTGCTTCACGGGAATTCTTTATCCAGACTGTTCCCCAACGAGTTTGCTAACTTTTACAATGCCGTGAGCTTGCATTTGGAGAACAATGGCTTGCACGACATCGTGCCGGGCGCTTTCCTAGGACTGCAGCTTGTGAAACGGCTGCACATTAATAACAACAAGATCAGGTCTTTCAAAAAGAGTACGTTTCTCGGTTTAGACGACCTGGAGTACCTTCAAGCCGACTTCAACCTTCTGAGGGACATTGACCCATCTGTGTTCAGGGACCTGAGTAAGCTCGAAGTTTTAATCTTAAACGACAACCTTATTAGCGCTCTTCCCATCAACGTGTTTCAGAACGTGCCCATCACGCACCTCGATCTGAGGGGGAACCGAATAAAAACGTTGCCTTACGAAGGGATTCTAGAGCAGATACCTGGCATCGTGGAGGTTTTACTGGAGGACAACCCATGGGATTGCAACTGCGACCTGGTTTCCCTAAAGGAATGGCTAGAGAACATCCCGCAGAACGCGCTCATTGGAAGGGTCATTTGTGAGGCGCCCACTCGGCTGCAAGGGAATGACCTGAATGAAACGGCCGAGACCGAGCTGTGCCCTTCAAAGAGCGGCATGGATTCCAGCCTGGTGGCGCCTCCCACCCAGGACGAGACCCCCAATCGCGGCCCCCATCCTACGCCCTATAAAACGAGCGGGGTGACCGAGTCCCATAGCGCCAGGGGAGGGCATAACAAGGGGCCTCCTAAAGCCAGGGAGAATTGGCAGTTGAAAATGAAGCCCACGGCCATGGCGACTGGTGCAATTGAAAGGGAGCCGCCGGCTAATTCGACCTGCCCTCAGTCTTGTAGTTGTAAGCTTATAGGAACTAGACAAGGGCTTGGGGTTAACTGCGAGGGCAGGAAGATAGAAAGTGTGGCTAATCTCAAACCCAAACCCCTGACCGCGCACGAGTTAAATCTGCGCGACAACAACATTCACACTGTCAGAAGGAACCAGCTCAGAGGCTATCATAGCTTGAATTTGCTTGATTTGGGGGGGAATAACATAAAAATGATCGAAAACGGCACTTTTCATAATCTGACCGAGTTGAGGTGGCTCTACATGGACAAGAACTACTTGGATAATTTAATGGCGGAGATGTTCGTTGGCCTTCAGAACCTGGAGTATCTCAGTTTGGAATATAATGACATCCAGCTCATAATGCCGGGCACCTTCAGTCCGATGCCCAACTTGAGGGTGCTCTTCCTCAACAACAACCTGCTCAAAGCTCTACCCGTGGATGCGTTCTTGGGGGTTTCTTTGTCTAAAATAAGCTTGCATAACAATTATTTCACATATCTTCCCGTGCCAGGTGTCCTAGACCAACTCAACTCCATTATCCAGATCGATTTACATGGGAACCCCTGGGATTGCTCGTGCAACATCGTCCCATTCAAACAGTGGACAGACAAACTCGGGGCGGACGTCATTGTGAGCGATCTCAAGTGTGAGTCCCCCGAGGAGTTCTGGAAGAGGGATTTCCGGCGAATCAGGAATGATCTGATGTGCCCTCAGCTGTACGAGAAGATCTCCCCCACCTCCTTGTCCAAAAACAGCACTTTCCCAGTAGACACGGGGACGAGGCCCAACTCCTACCTGGAGCCCAGCAGAGTGTCGATATCGGTGCTCGTGCCCGGCCTGCTGCTGGTTTTCGTGACGTCTGCCTTCACCGTGGTGGGAATGCTGGTCTTTATCCTGCGCAATCGAAAGAGATCGAAACGGAGAGACGGCAACTCTTCTGCGTCAGAAATCAATTCTTTACAGACAGTTTGCGACTCGTCCTACTGGCACAGTGGAGCTTATCATGCAGACGGGCCACACAGAGGCTACGACTGTGGTGCCCACTCTCTCTCCGACAAATGATGCTCACAGAGACACGAGCGAGCAAAAGGACGTACTGCGTTTCGTATGTTGGAGGGCGACACACAAACATTAGACCTCTGACTCACCTCTGTGGAAAAAAATAGCCTATTTTTTGTTGCTTCGGTTGAGTATAGCGTCCATGAAACACTGCAATGGGGCCCCCACTGTTATATATGTACAGAGCCTCTCTCTCTTTCTCTCTCCTCCCAGCTCAGACTGCAAACACGCTCAAAAGAGGACGTGGGAACGGTGCACGAACGCATGAATGTAATGTAAATAACGGACTGTAACATATCTGCATGATTCGCATGGTCTCAACACACACTGGGAACCATTACCATAGTATCAAGGAAGCCAACGCGACCCTTCTTTCGTGTTATCAATATACATATATATATATAAATATAAAACTATATATGACTATATTAAAAGTGCCATTTCTTCTATTTTTTGTCAGTTAGAATTTGTATTTGCTGTTTGATTTCTCTTTCTCAAAGGCGGACAGGTCGAAAGGTGGAAATAACGAGTTGTAAATGCATGTACTTTCCGTTTTATCAGTTGATTGTTGATTGGTTGATATGGGGATTATTTATACTTTTATTTTGTGCAGATTTCTCATGTATCTGCCCAGTCATCTCCTTTATGAATGTAAAAATGTGTTTATCTTATAGTGTGCCAACTGTTGACATGTTTGGGATGCGGATAAGCATGACCGATTCAAGTCACTGACATGCTTATGCTGCGAAAATTCAATGTAGCTCCAGTGGTTCGTGATCTTGTGTGTCGATGGATACAGTGTGAGGGTAGAAGGACGCAAGGGGAGGATTTTTTTTTTTTTTTTTCTTCGTTTTGAAGACTAATGTTTAAAGGGGGTTTCAGTATGTGCAGATTTGGATCCGTCTACAGAGTGCACATAGACTAAGATGCCTTTATTTTTTATTTATTATTGTTATTATTATTATTCTTTTTAGGGGATGAAGTATTCCTTCACAAAAGCCTATTATTCACTGTAAGTATTGTGAGCTTTTGTAAAGCCATCTATTTTGTCCAAATACGAGAAAGGAATATTCCGCCGTTTGCTACTTGGATACGTCCTATAAGTGGATGAAAAGGTGTAAATATATAGGAGAAGCAGACCAGAGGCATGTCTGTGCATTTGACTGATGTCATCACAGCAGCCGTAGATGGAATAGCCGCCTCTAGATGTCGCTGTTGCCTCTCAAGCGTATGAAACCATGCTGGGAGCTGAAGTTCACCGGTATGTGTAGGCGAACCAGCATTCACATTATCAACATAACTATAGGCCTAAGTGTGTCACTGTGATGGCTAATACTCAGAGAGAAGGGCGGGATCAGATTCAGTAGTGAAGAACACGAGTTGAACGCTGTTTCCAAAATGCCATTTTTACAAACAAGATGTAGAGCGCAGTGCCATGCATCTTACTGCTATAGCATTTAAATGTCACTGCTGATGTTTTTGAGGTTGAGTTTGTATCACTGTAATGATTTTACAACAAAACAACATGA

Function

symbol description
slitrk1 Is expressed in nervous system.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_02118245_02120332.mRNA True 4998 mRNA 0.45 1 2116861 2121858

Neighbor

gene id symbol gene type direction distance location
CI01000299_01855614_01858092 SLITRK6 coding upstream 258158 1855614 ~ 1858703 (+)
CI01000299_01197545_01215711 NA coding upstream 900872 1197422 ~ 1215989 (+)
CI01000299_01139684_01147241 NA coding upstream 969613 1139497 ~ 1147248 (+)
CI01000299_01049508_01055558 NA coding upstream 1061125 1049390 ~ 1055736 (+)
CI01000299_01036243_01046776 NA coding upstream 1069258 1035037 ~ 1047603 (+)
CI01000299_02195854_02198465 NA coding downstream 73940 2195798 ~ 2198925 (+)
CI01000299_02612562_02613926 NA coding downstream 490641 2612499 ~ 2614792 (+)
CI01000299_02696797_02704180 TUBA1C, TUBA1B, TUBA1A, TUBA8L2, TUBA4B.S, TUBA4A, TUBA4B coding downstream 574774 2696632 ~ 2704220 (+)
CI01000299_02706136_02711943 STK16 coding downstream 584015 2705873 ~ 2713740 (+)
CI01000299_02753238_02760499 PUR9, ATIC coding downstream 631380 2753238 ~ 2760953 (+)
G405099 NA non-coding upstream 8908 2107716 ~ 2107953 (+)
G405095 NA non-coding upstream 27329 2089207 ~ 2089532 (+)
G405088 NA non-coding upstream 35351 2081250 ~ 2081510 (+)
G405066 NA non-coding upstream 86894 2029613 ~ 2029967 (+)
G405059 NA non-coding upstream 91868 2024788 ~ 2024993 (+)
G405297 NA non-coding downstream 409475 2531333 ~ 2531597 (+)
G405314 NA non-coding downstream 456230 2578088 ~ 2578375 (+)
G405332 NA non-coding downstream 469569 2591427 ~ 2591654 (+)
G405343 NA non-coding downstream 500094 2621952 ~ 2622265 (+)
G405345 NA non-coding downstream 504170 2626028 ~ 2626240 (+)
G403972 NA other upstream 1510511 604870 ~ 606350 (+)
G403609 NA other upstream 1706073 364139 ~ 410788 (+)
G403578 NA other upstream 2044590 35462 ~ 72271 (+)
G405609 NA other downstream 1032739 3154597 ~ 3155174 (+)
CI01000299_04131136_04133439 PCNP other downstream 2009400 4131060 ~ 4133941 (+)
G405842 NA other downstream 2173675 4295533 ~ 4320141 (+)
CI01000299_04480751_04492829 NA other downstream 2367960 4480553 ~ 4493116 (+)
CI01000299_04703290_04704365 NA other downstream 2580524 4703071 ~ 4704780 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G782 slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534 unknown NC_056699.1 CM032068.1 4007840 ~ 4014287 (-)