CI01000299_02612562_02613926


Basic Information

Item Value
gene id CI01000299_02612562_02613926
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 2612499 ~ 2614792 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_02612562_02613926.mRNA
GTATAAATGTGCAGACAAGTTAAGAAAAAGGCTGTCATTTGTAGGGTATATATAGGAAGGAACATGTCTCAATCTCTCCATCACTCGTTGAGGAAGATGCTTGTGGACAAGACTTGTGGTAGATATTACTCTGCAAAGAGATCCTTCTTTATTTTTGATCGGGACTTCAGATGTGTTCAATGCCAGCCGGAGGGTTCCCACTTCAGTGTAAAGATGGAGACGAGAGCTCAAAATGGCGGCGGCAGCGGCTCCTCTGGCTTGCTGCGAGCTTTGCGTGACAGTGGCAGACCCCAAACTGGGGACTCAGAGCCTTGGGAAGGTCAGGTGCTCTCCCTGGACCAGATCAGGACCATCCGCAGCAGCAATGAGTACACGGAGGGCCCGACGGTGGTACCCCGGCCGCCAGCCTCCCAGCAGAAAGTGGACTCGCAACCTTCCAGCCTGAATTCCAACTCCTCCATTGAGCTCTCCGAGCATAGAAGCTCCCCAGGAGCCCAACGAGCTGGACAGCAGACTCCTCCACAAGCCCCTCATTCGCCGAGGAGTGACGTGAGCAGATCTAACAGTGGCCCCAGCGATGGCTCACATGGTACGGCTAGGGCGAGCACAGGCAGCACCTCATCGGAGCAAAGACTTTTGGGAAACACAGCCGGGATGGTCGATCGGGTGGTGAGGGTGCAGCCTAAACGCTCAGAGCCGAAGCAGGACGAACTGAAACCCTTTGCGCCGGCCGGAGGCCAGGCCACCGACGGAAAGCACTCGAATCGCTGTGAGGACTGCGGCCGCTGCAAGTGCAAAGCGTGCACCTGCCCTCGGACCCTGCCCTCCTGTTGGATGTGCGGGCGCAGGTGCGTTTGCTCTGCGACGACGACGATGGACTATGTCACCTGTGTCTGCTGCGTCAAAGGTCTCTTCTACCACTGCTCCAACGACGATGAGGATGTGTGCGCGGACAAGCCCTTCTCTTGCAGCCAGTCGCATTGCTGCATGCGGTGGTCGGCCATAAGCGTCCTGACACTTTTCTTGCCCTGCCTGCTTTGCTACCTCCCAGCGAAGGGCTGCGTGGCACTGTGCCAGGCGTGCTATGACTGCACCAGTCGGCCAGGATGCCGCTGCAAGAACAAAGGAGTTGACGAGGCTCGGTTCCTGGAGTAGCCCTGGGAAGATAACCATATCTGGGACTATCTCCAGAGCAGTGGAACAATTTTCACAAATTGTTGTAGTTTTGGCACTGTAGACCGTGAGGTGACATTGGATTGGCAAAAACTGGTTTGAAGTGGTTTGTTTGTTTGTTTGTTTGTGTTTTGCTTTTCTCTTATCCACTTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCACTCTTTAAGGGGGGATAACGTTTGTTGCAACAACCTTCCCTGTCCTTTGTTTTAAACTGAAGTCCAGAATGTTAGCCTTATTGACATTCAGTAATATGACTGATAAAGGTGACAGACTCTCCTAACTAACTGTTTGTGAATAGTATCTGCAAAGTATGTAAATTAGCAAATGAGCTCTTTTTCTGAGAGATTTTATTTTTGTACATATAATATTTCAACTGTGAAACGCATTGTGCCAAACCAGAGGCACCTTGACAGATCCATATATATGATGCATATAAAACGTGTATAGTGTTGTACATTCGTTTCGAATGTACGTCAATCACTCTTTTGATATTTTGCCTTATAGAAGAGAAACCTTACATGAATTATCCCTACAGCTATACTTGTAAATTGTACAGTGACCCTAAGAAAAACTTTATTTTCTAATTTCAACACATTGTTTAGTGTAAAAATATTTATTTGAAGTTTTATTATTTTATAAAGTAATATTTATTTTGAGAGGCATCTTTATAGGCATCACCCCAACTTTGAGAAACAAAACCTCCTCTGTTGTTGCTGCAAAAAAAAGGGTGACAAGGGTGTCAAATCTGATGCATATGTTCACTATAAAATAGAAAATATATTAACGTTTTGAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_02612562_02613926.mRNA True 2021 mRNA 0.48 2 2612499 2614792

Neighbor

gene id symbol gene type direction distance location
CI01000299_02195854_02198465 NA coding upstream 413574 2195798 ~ 2198925 (+)
CI01000299_02118245_02120332 SLITRK1 coding upstream 490641 2116861 ~ 2121858 (+)
CI01000299_01855614_01858092 SLITRK6 coding upstream 753796 1855614 ~ 1858703 (+)
CI01000299_01197545_01215711 NA coding upstream 1396510 1197422 ~ 1215989 (+)
CI01000299_01139684_01147241 NA coding upstream 1465251 1139497 ~ 1147248 (+)
CI01000299_02696797_02704180 TUBA1C, TUBA1B, TUBA1A, TUBA8L2, TUBA4B.S, TUBA4A, TUBA4B coding downstream 81840 2696632 ~ 2704220 (+)
CI01000299_02706136_02711943 STK16 coding downstream 91081 2705873 ~ 2713740 (+)
CI01000299_02753238_02760499 PUR9, ATIC coding downstream 138446 2753238 ~ 2760953 (+)
CI01000299_02813216_02818668 CPO coding downstream 198349 2813141 ~ 2819096 (+)
CI01000299_03144958_03149338 NA coding downstream 529598 3144390 ~ 3149340 (+)
G405332 NA non-coding upstream 20845 2591427 ~ 2591654 (+)
G405314 NA non-coding upstream 34124 2578088 ~ 2578375 (+)
G405297 NA non-coding upstream 80902 2531333 ~ 2531597 (+)
G405099 NA non-coding upstream 504546 2107716 ~ 2107953 (+)
G405095 NA non-coding upstream 522967 2089207 ~ 2089532 (+)
G405343 NA non-coding downstream 7160 2621952 ~ 2622265 (+)
G405345 NA non-coding downstream 11236 2626028 ~ 2626240 (+)
G405347 NA non-coding downstream 12780 2627572 ~ 2627835 (+)
G405349 NA non-coding downstream 14537 2629329 ~ 2629617 (+)
G405350 NA non-coding downstream 15073 2629865 ~ 2630083 (+)
G403972 NA other upstream 2006149 604870 ~ 606350 (+)
G403609 NA other upstream 2201711 364139 ~ 410788 (+)
G403578 NA other upstream 2540228 35462 ~ 72271 (+)
G405609 NA other downstream 539805 3154597 ~ 3155174 (+)
CI01000299_04131136_04133439 PCNP other downstream 1516466 4131060 ~ 4133941 (+)
G405842 NA other downstream 1680741 4295533 ~ 4320141 (+)
CI01000299_04480751_04492829 NA other downstream 1875026 4480553 ~ 4493116 (+)
CI01000299_04703290_04704365 NA other downstream 2087590 4703071 ~ 4704780 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location