CI01000299_05849494_05852270


Basic Information

Item Value
gene id CI01000299_05849494_05852270
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 5849402 ~ 5852506 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_05849494_05852270.mRNA
ACTCGCGGAGGCGCGCAGAGAAATTCAGATTATCTGACTGAAGACTTTCGACGTTTCGTTATTTCGCTACAGATCACGAAGCGTCAAGCTTTGGTTTAAATCCATGTAGGTTTTAAAGTATAAGAGATTAAATATCTCAATAAACCCACGGGAACCATCTTCAGCAAAGTTTTAGGAAATTCGTTTTTATTGCGGCCATTTTCCAGAAAAGTCAAGTAACGTCTCAGTCACAGAAAATGTATACATTTCTTTGGTTCTGTTTGTGTTATGGACTCCTGTTTGTTGTGTTTGGTGTTGGGACAGGTGAAATCAAAAGGGTATCAGAGGGAGAGTCTGTTACTCTAAACATTAAGGCGCAGAGAGATAAGGAGCTACTGTGGTTGTTTGGAGATCAAGAGACTCTTATTGCTGAAATCAAGATGGAAGACGGAGTCTATAAAACATATGATGGTGCTGATGGGAGATTCAGAGGCAGACTGGAGCTGGACTATAATACTGGATCTCTGACCATCACAAACATCAGAACTGAGCATGCTGGACGCTATCAACTTCAGATCATCATCAGCGATACGTTCTCATACGAGACATTCACAGTTTCTGTCTATGGCGACTCGTCTGCCCGTTCCTGTCATCAGCAGAGACTCTTCTCAGTGTTCTTCATCATCAGGATCGTCAGTGTCAAAATGTTCACTGTTGTGTTCAGCTGTGAATGTGAGTCATGTGACTCTCTCCTGGTGGAACATCAGGATAAAAACACTTACAGATGTGTGCTGAACAATCCCATCAGCCACCAGACCAAACATCTGGACATCAGTGGACTCTGTCAGCCATGTCCAGCTCCTCTGCCGATTCCTGTCATCAGCAGAGACTCTCCTCAGTGTTCTTCATCATCATCACCAGACCAGAATTGTTCACTGCTGTGTTCAGTGTTGAATGTGAGTCATGTGACTCTCTCCTGGTACAAAGGAAACGGTTTATTGTCCAGCGTCAGTGCGTCTGATCTCAGCGTCAGTCTCTCTCTACCTCTGGAGGTGGAACATCAGGATAGAAACACCTACAGCTGTGCGATCAACAATTCGTTCACTAACCAGACTCAACATCTGGACATCTCTCAGCTCTGTCGGCCATGTTCAGGCCGCACGCACTGTTGTGGTTTTACTGAAACTGTCATCCGATTGGCTGGCTCTGCTCTGGTGGGCGTGGCTACTGTTGCCATTCTGGTTTATGACATCAGGTCCAGAAGGTCTTATCAGAAGAGGAGAGAGCAGACGACCCCGCCGCACGCAGATGAATATGATGATGTGGCATCAGGTCGCTAGGTGGTGATGATGTTCAGCTGTCCGTTACAGGAATGCAAATAAGGAATACACCAGGCATCTCAAACCTTGTCAGTCATACAGAGAATAATAAA

Function

NR:

description
novel protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_05849494_05852270.mRNA True 1411 mRNA 0.45 6 5849402 5852506

Neighbor

gene id symbol gene type direction distance location
CI01000299_05831615_05835696 NA coding downstream 13594 5831391 ~ 5835808 (-)
CI01000299_05826769_05831144 NA coding downstream 18090 5825966 ~ 5831312 (-)
CI01000299_05818562_05822413 NA coding downstream 25535 5818406 ~ 5823867 (-)
CI01000299_05802706_05815472 MRPL16 coding downstream 33930 5802504 ~ 5815472 (-)
CI01000299_05739937_05770480 MRPL39 coding downstream 78595 5739808 ~ 5770807 (-)
CI01000299_05856747_05860959 NA coding upstream 4210 5856716 ~ 5862986 (-)
CI01000299_05896205_05898855 NA coding upstream 43537 5896043 ~ 5898857 (-)
CI01000299_05919510_05924061 TXNL4B, TXNL4B.S coding upstream 66622 5919128 ~ 5924628 (-)
CI01000299_05927821_05933216 BLZF1 coding upstream 74808 5927314 ~ 5934832 (-)
CI01000299_05946615_05949088 NA coding upstream 93827 5946333 ~ 5949234 (-)
G407848 NA non-coding downstream 73861 5774249 ~ 5775541 (-)
G407764 NA non-coding downstream 209536 5634840 ~ 5639866 (-)
G407734 NA non-coding downstream 294557 5552628 ~ 5554845 (-)
CI01000299_05457285_05462908 NA non-coding downstream 386230 5456864 ~ 5463491 (-)
G407669 NA non-coding downstream 431031 5413334 ~ 5418371 (-)
G407858 NA non-coding upstream 77133 5929639 ~ 5930546 (-)
G407827 NA non-coding upstream 92869 5945375 ~ 5946025 (-)
G407825 NA non-coding upstream 111174 5963680 ~ 5969556 (-)
G407881 NA non-coding upstream 166036 6018542 ~ 6023664 (-)
G407884 NA non-coding upstream 172519 6025025 ~ 6025802 (-)
G407805 NA other downstream 13413 5835889 ~ 5835989 (-)
CI01000299_05428160_05443433 APP, APPA other downstream 393294 5427661 ~ 5443433 (-)
CI01000299_04913779_04927715 NA other downstream 920584 4913373 ~ 4927715 (-)
G407413 NA other downstream 1298681 4475994 ~ 4550721 (-)
CI01000299_06526127_06532048 CEP97 other upstream 679495 6526127 ~ 6532048 (-)

Expression


Co-expression Network