CI01000299_05457285_05462908


Basic Information

Item Value
gene id CI01000299_05457285_05462908
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 5456864 ~ 5463491 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_05457285_05462908.mRNA
ATATCATAATGAGATGCTCTTGTTTACTCTTCGTGTTTGGTTGAGGTCAGGGATGATGCACACAGAGAGGATTCGTGAAAACACGATTGAAGAGAGACCTAAATATAGACTTCAGGGTCACTACAGAGAGAAGATGATGATGATGATGCAATTTGCAGCTATTGAAAAGGGCGAACGTGTTCCCAGAATGATCGTGCGGATCTTGTTTTGTTCCTGAGGTAACCGATAATGCTCGTGTGATGATGATGATGATGAGTCGTGACGGTGGAGGCGGGCAGCGTCGCGCGGCCCTTCAGTCGCATCCAGACTCCCTGAGCGGCTGGACGACGTTCCTGGGGGAGGGGATCGAGTGAAGAAAAGAAAATAGCGCAAGGAAGAAGTTAAAGACAAAGAGGAAGGAGTCAAGAGGAGAAGTTCTGAGAGACTCGTGGAACACGTGCAGCGTTATGGACTTTATTTTAAGCGTCTAAAACTTGACAGTCAGACCAACACAGACGTATCATCGGTTCGATGAATTGACCGTCAACTAACATGTGAAAGTTGGTTAGACGCGTTTGTTTTTCCATAAATCAACGGGAACATTATGGAAAATCCGAGGACGGCGAGTTCACAGAAGAGTTGGAAGTTCGTGCGGGACTCGCTGCTGCTCTGCTTATTCGCCGGACGTGGAGACGCTCAGTGTGACAGCTGTGTTGAGTACTGCTGCGATGGAGTTCCTCCTTTCTGCTGTTCTTATTACGCGTATGTGGGAGACGCCCTCCACCTCCATACAGCTATGATTGTGAGATGTATCCTCCTGATCTGCGGCCGCCTCCGTACACACCGACTCCACCCAGAGCGGCAAACTACTCTCCGCCTCCACCCTATCCAGGCGACAGCAGGAAATGAGCCTGCGTTCGTGCCCTTATTCTGCTGCTGCTGATGATGAAGATAGTTGCACTCGGAATTGCACAAAATCTCTGCACAACACAAGACCAGCGCTCTGGAAACAAAGCAGAGGATTTCGACCGCAGATGCTTCTCATGTGGGGATTTGAATATTTTTTTTTTATTAATGCAATTGACATTTATGGTCTCACAAATCTAATTAACTTTAATAAA
>TU468429
CTGGACGACGTTCCTGGGGGAGGGGATCGAGTGAAGAAAAGAAAATAGCGCAAGGAAGAAGTTAAAGACAAAGAGGAAGGAGTCAAGAGGAGAAGTTCTGAGAGACTCGTGGAACACGTGCAGCGTTATGGACTTTATTTTAAGCGTCTAAAACTTGACAGTCAGACCAACACAGACGTATCATCGGTTCGATGAATTGACCGTCAACTAACATGTGAAAGTTGGTTAGACGCGTTTGTTTTTCCATAAATCAACGGGAACATTATGGAAAATCCGAGGACGGCGAGTTCACAGAAGAGTTGGAAGTTCGTGCGGGACTCGCTGCTGCTCTGCTTATTCGCCGGACGTGGAGACGCTCAGTGTGACAGCTGTGTTGAGTACTGCTGCGATGGAGTTCCTCCTTTCTGCTGTTCTTATTACGCGTATGTGGGAGACGTGCTCTCGCCCTCCACCTCCATACAGCTATGATTGTGAGATGTATCCTCCTGATCTGCGGCCGCCTCCGTACACACCGACTCCACCCAGAGCGGCAAACTACTCTCCGCCTCCACCCTATCCAGGCGACAGCAGGAAATGAGCCTGCGTTCGTGCCCTTATTCTGCTGCTGCTGATGATGAAGATAGTTGCACTCGGAATTGCACAAAATCTCTGCACAACACAAGACCAGCGCTCTGGAAACAAAGCAGAGGATTTCGACCGCAGATGCTTCTCATGTGGGGATTTGAATATTTTTTTTTTATTAATGCAATTGACATTTATGGTCTCACAAATCTAATTAACTTTAATAAAAGTTATTTCAAGCAGCGTGAGACCAGGACAGGCCTATAAACTCACATGTGATTCGGTAAATGTGATGAGTTTTGTTCAAAATCAGTGTTATTTCTGTTAATGACGAATGAAAATACCGTGAAATGAACTGTTAATATGGGAATAAACTTTATATGTGTTTTACAGAGTAACATTATGTTCTCATACCTACTATGTGTCTTGATTAATCCACTGAGGAAATAATAATAGGATTATGAATAGGGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_05457285_05462908.mRNA False 1100 mRNA 0.48 3 5457107 5463491
TU468429 True 1032 lncRNA 0.44 3 5456864 5463172

Neighbor

gene id symbol gene type direction distance location
CI01000299_05428160_05443433 APP, APPA coding downstream 13674 5427661 ~ 5443433 (-)
CI01000299_05419449_05423414 ATP5J coding downstream 33693 5419403 ~ 5423414 (-)
CI01000299_05379545_05381902 NA coding downstream 74967 5379149 ~ 5382140 (-)
CI01000299_04913779_04927715 NA coding downstream 529392 4913373 ~ 4927715 (-)
CI01000299_04861862_04862244 NA coding downstream 594514 4861577 ~ 4862593 (-)
CI01000299_05466693_05471714 ADAMTS1 coding upstream 2151 5465642 ~ 5471987 (-)
CI01000299_05478688_05502027 ADAMTS5 coding upstream 13991 5477482 ~ 5503268 (-)
CI01000299_05512316_05521322 NA coding upstream 48560 5512051 ~ 5521322 (-)
CI01000299_05602070_05604608 NA coding upstream 138492 5601983 ~ 5604615 (-)
CI01000299_05739937_05770480 MRPL39 coding upstream 276317 5739808 ~ 5770807 (-)
G407669 NA non-coding downstream 38736 5413334 ~ 5418371 (-)
G407591 NA non-coding downstream 274745 5085394 ~ 5182362 (-)
G407565 NA non-coding downstream 460198 4957987 ~ 4996909 (-)
G407564 NA non-coding downstream 500742 4956098 ~ 4956365 (-)
G407562 NA non-coding downstream 517168 4939691 ~ 4939939 (-)
G407734 NA non-coding upstream 89137 5552628 ~ 5554845 (-)
G407764 NA non-coding upstream 171349 5634840 ~ 5639866 (-)
G407848 NA non-coding upstream 310758 5774249 ~ 5775541 (-)
CI01000299_05896205_05898855 NA non-coding upstream 358084 5896043 ~ 5898857 (-)
G407858 NA non-coding upstream 466148 5929639 ~ 5930546 (-)
G407413 NA other downstream 906386 4475994 ~ 4550721 (-)
G405053 NA other downstream 3439057 2017687 ~ 2018050 (-)
G407805 NA other upstream 364345 5835889 ~ 5835989 (-)
CI01000299_06526127_06532048 CEP97 other upstream 1068510 6526127 ~ 6532048 (-)

Expression


Co-expression Network