G407848


Basic Information

Item Value
gene id G407848
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 5774249 ~ 5775541 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU468628
TATATAAAGGAGAGACAGAGAGAGAAAGTGGATGAGAACGAGTCTCGACGTTTGAAGTGAATGGAATATCTCAAAGACACGTGCAAAAGGCTCAGGACTAAAACCAGCCACACGTCGAGAGAGTAAACCAGAGGATCGGCAGATCTAACGGAGGAATATATCAACACGACGAGGACGGAAGTCAAACAGGTTCTGCTTCGGATCTCGACGCTGTGTTTCCGTGTCCCAGCTCGGGATTAATGCTAATCGTGATAGGGGTTTTGTGCTTTTGAACACCTATGCTGTTAGCATTAGTCCTGCGCTGGCGACCAAACCTCCAAACCCAGCAGTCTGAGGATCATAAAGCACGGCACTGCGTTGTGTTCATGCAGTTTGTGAGTTGGACATTCACACTTCAGCAGAAGCGACTCCATTAGGAAATAATCACAAATAGCTTAAAAGTTAAAGTCACCTGTTCACTGTATAGTCAAATCGTTCTTGCAGTTTCTGTATGAATTGAAAGCAAATAAAAAGAAACTTGCAAACAGTTGTCCTTTGCATTAACTTTCGTTTCCTTTGTTGGATGGGCTGAATGTGAGTTTTTATGCATATGAGGTTTTCTTTTTGTGAATGAACAGATTTACTACTATTGTACTGTTACATAATCATTCTAACCTCACCCCAGCTAACAAAGAATATGCTCTTTGAATGTTTTGCTAACATTCCTATATATTAAGTTATGAAAGTTATTTTCTCAATCAGTTTGACACATTTCTCCAAAGTAATGTACCTGCTCTCAAAACAGTTAACACAGTGATCTAAACACACTCTGACCTTAGCCAAAGAGTTCAACTTTACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU468628 True 838 lncRNA 0.40 2 5774249 5775541

Neighbor

gene id symbol gene type direction distance location
CI01000299_05739937_05770480 MRPL39 coding downstream 3442 5739808 ~ 5770807 (-)
CI01000299_05602070_05604608 NA coding downstream 169634 5601983 ~ 5604615 (-)
CI01000299_05512316_05521322 NA coding downstream 252927 5512051 ~ 5521322 (-)
CI01000299_05478688_05502027 ADAMTS5 coding downstream 270981 5477482 ~ 5503268 (-)
CI01000299_05466693_05471714 ADAMTS1 coding downstream 302262 5465642 ~ 5471987 (-)
CI01000299_05802706_05815472 MRPL16 coding upstream 26963 5802504 ~ 5815472 (-)
CI01000299_05818562_05822413 NA coding upstream 42865 5818406 ~ 5823867 (-)
CI01000299_05826769_05831144 NA coding upstream 50425 5825966 ~ 5831312 (-)
CI01000299_05831615_05835696 NA coding upstream 55850 5831391 ~ 5835808 (-)
CI01000299_05849494_05852270 NA coding upstream 73861 5849402 ~ 5852506 (-)
G407764 NA non-coding downstream 134383 5634840 ~ 5639866 (-)
G407734 NA non-coding downstream 219404 5552628 ~ 5554845 (-)
CI01000299_05457285_05462908 NA non-coding downstream 311077 5456864 ~ 5463491 (-)
G407669 NA non-coding downstream 355878 5413334 ~ 5418371 (-)
G407591 NA non-coding downstream 591887 5085394 ~ 5182362 (-)
CI01000299_05896205_05898855 NA non-coding upstream 46034 5896043 ~ 5898857 (-)
G407858 NA non-coding upstream 154098 5929639 ~ 5930546 (-)
G407827 NA non-coding upstream 169834 5945375 ~ 5946025 (-)
G407825 NA non-coding upstream 188139 5963680 ~ 5969556 (-)
G407881 NA non-coding upstream 243001 6018542 ~ 6023664 (-)
CI01000299_05428160_05443433 APP, APPA other downstream 318141 5427661 ~ 5443433 (-)
CI01000299_04913779_04927715 NA other downstream 845431 4913373 ~ 4927715 (-)
G407413 NA other downstream 1223528 4475994 ~ 4550721 (-)
G405053 NA other downstream 3756199 2017687 ~ 2018050 (-)
G407805 NA other upstream 52295 5835889 ~ 5835989 (-)
CI01000299_06526127_06532048 CEP97 other upstream 756460 6526127 ~ 6532048 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G603 NA non-coding NC_056699.1 CM032068.1 2245339 ~ 2246590 (-)