G407591


Basic Information

Item Value
gene id G407591
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 5085394 ~ 5182362 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU468329
AAGGGGGTGAGGCCATGTTGGGCTGCTTTAGAGAAGAGGAAGAGTTGTTGTAGTAGAGTGTTGTTGACATGCCGTCATTTTACGCCGGACTGCTTCACAAACGAGGGTCAATTCAACACAAAAGATAAACATGACGGCACATGCTAGTGGATGAGCTGAATCAACTCCACAGCAACTACATAAATTAATCCACTAACCATTCAGAAACATCCAGTTTCATTCTAAAAGTTGTAACTTCTTCCTGAGTCTCTCCATCAGTGTCGACTCCGGTTTGAACAATGTAAGGCTGAACACCGTTACTGACAATCCTCATTTTGGCTGCGTGAGATTCTCCAGCTTTGTTGTCGTTGAGCGACCGAAGCGCGAGCTGTTCAAACTCCACCCTCTTCTGGAAAGCGGGCCGGGAGCAGCAGCTCATT
>TU468330
GTCCATACGGGTTTTGCGCAAAAGATTAACATGACGGCACATGCTAGTGGATGAGTTGAATCAACTTCACAGCAAATACATAAATTTATCCACTAACCATTCAGAAACGTCTAAAAGTTGTAACTTCTTCCTGAGTCTCTCCATCAGTGTCGACTCCGGTTTGAACAATGTAAGGCTGAACACCGTTACTGACAATCCTCATTTTGGCTGCGTGAGATTCTCCAGCTTTGTTGTCGTTGAGCGACCGAAGCGCGAGCTGTTCAAACTCCACCCTCTTCTGGAAAGCGGGCCGGGAGCAGCAGCTCATT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU468329 False 419 lncRNA 0.47 2 5085394 5182362
TU468330 True 308 lncRNA 0.46 2 5085394 5111234

Neighbor

gene id symbol gene type direction distance location
CI01000299_04913779_04927715 NA coding downstream 157679 4913373 ~ 4927715 (-)
CI01000299_04861862_04862244 NA coding downstream 222801 4861577 ~ 4862593 (-)
CI01000299_04741460_04746667 NA coding downstream 338727 4741447 ~ 4746667 (-)
CI01000299_04708767_04714088 RCAN1B coding downstream 371306 4708503 ~ 4714088 (-)
CI01000299_04658984_04668843 ATP1A1A.4, ATP1A1 coding downstream 416372 4658895 ~ 4669022 (-)
CI01000299_05379545_05381902 NA coding upstream 196787 5379149 ~ 5382140 (-)
CI01000299_05419449_05423414 ATP5J coding upstream 237041 5419403 ~ 5423414 (-)
CI01000299_05428160_05443433 APP, APPA coding upstream 245299 5427661 ~ 5443433 (-)
CI01000299_05457285_05462908 NA coding upstream 274745 5456864 ~ 5463491 (-)
CI01000299_05466693_05471714 ADAMTS1 coding upstream 283280 5465642 ~ 5471987 (-)
G407565 NA non-coding downstream 88485 4957987 ~ 4996909 (-)
G407564 NA non-coding downstream 129029 4956098 ~ 4956365 (-)
G407562 NA non-coding downstream 145455 4939691 ~ 4939939 (-)
G407526 NA non-coding downstream 261843 4822041 ~ 4823551 (-)
G407475 NA non-coding downstream 380593 4704124 ~ 4704801 (-)
G407669 NA non-coding upstream 230972 5413334 ~ 5418371 (-)
G407734 NA non-coding upstream 370266 5552628 ~ 5554845 (-)
G407764 NA non-coding upstream 452478 5634840 ~ 5639866 (-)
G407848 NA non-coding upstream 591887 5774249 ~ 5775541 (-)
G407413 NA other downstream 534673 4475994 ~ 4550721 (-)
G405053 NA other downstream 3067344 2017687 ~ 2018050 (-)
G404976 NA other downstream 3204406 1855639 ~ 1880988 (-)
G407805 NA other upstream 645474 5835889 ~ 5835989 (-)
CI01000299_06526127_06532048 CEP97 other upstream 1349639 6526127 ~ 6532048 (-)

Expression


Co-expression Network