CI01000299_04708767_04714088 (RCAN1B)


Basic Information

Item Value
gene id CI01000299_04708767_04714088
gene name RCAN1B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4708503 ~ 4714088 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_04708767_04714088.mRNA
ACTACAAAGTGCAACAACTTCTGCCTGGTGGCCACACCAGTGGATCATGACATATTCATTCGGACACAGATTCGGGAGCAGTTTGAGGCTTTGTTCCGCGCATTTGATCCAGGCACATCGTTCCAGTTCTTCAAAAGCTTCAGACGAGTTCGGATCAACTTCACCGATGCTTTAGCAGCAGCCGAGGCCCGAGTCAAACTCCATAAGAGTGACTTCAATGGAAAGGAGATGCGTCTGTATTTTGCTCAGTCGGTACATATTGGCAGTCCTCGCCTCGAGCCTCCTAAACCAGAGAAGCAGTTCCTCATCTCCCCGCCGGCATCGCCCCCTGTAGGCTGGGCGCAGTCGCAGGATGCTATGCCCGTCCTCAACTACGACCTGCTGTGTGCTGTGTCTAAACTAGGACCAGGTGAGCAGTACGAGATCCACACTGGAACCACCAACACTCCCAGCGTCATCGTGCACGTGTGTGAGGACGAAAGCTCTGAGGACGAGGAGGAAGCAGCAGAAAGCGGCAAACGCGCCCGACCCAAGATCATCCAGACCCGTCGCCCAGACTATGTCCCGTCCGTTAACCAGTGAGCGGACATTCTGGGCCGTTTCATCTTTGCGACCAACGCTGGAATAACTAGGAAACATGCAGTCATGCAGTTTGTCATCCTTACCACCCGGGGCGGTGGTGAGCGTCAAATTCTCTTCCTAGTTAGCGAGGGAGTCAACCATCCTCATAATCTCGCGTTTCATTTCTTAACATCCATCTCTGATGGAGTCAGGGACTTGGGAGAGTTTCTCTCGTATTATGAATGTCATTATTTGCTTGACGTCACAACTGTGTATTTTAATAAA

Function

symbol description
rcan1b Predicted to enable nucleic acid binding activity. Predicted to act upstream of or within calcineurin-NFAT signaling cascade. Human ortholog(s) of this gene implicated in Alzheimer's disease. Orthologous to human RCAN1 (regulator of calcineurin 1).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K17901 RCAN1, MCIP1; calcipressin-1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_04708767_04714088.mRNA True 846 mRNA 0.52 4 4708503 4714088

Neighbor

gene id symbol gene type direction distance location
CI01000299_04658984_04668843 ATP1A1A.4, ATP1A1 coding downstream 39481 4658895 ~ 4669022 (-)
CI01000299_04645836_04651938 ATP1A1A.4, ATP1A1B, ATP1A1, ATP1A1A.1 coding downstream 56565 4645639 ~ 4651938 (-)
CI01000299_04603421_04609353 ATP1A1A.4, ATP1A1A.2, ATP1A1A.3, ATP1A1 coding downstream 99150 4603391 ~ 4609353 (-)
CI01000299_04587880_04594059 ATP1A1A.4, ATP1A1A.5, ATP1A1A.3, ATP1A1 coding downstream 114383 4587794 ~ 4594120 (-)
CI01000299_04456420_04468754 NA coding downstream 239053 4456229 ~ 4469450 (-)
CI01000299_04741460_04746667 NA coding upstream 27359 4741447 ~ 4746667 (-)
CI01000299_04861862_04862244 NA coding upstream 147489 4861577 ~ 4862593 (-)
CI01000299_04913779_04927715 NA coding upstream 199285 4913373 ~ 4927715 (-)
CI01000299_05379545_05381902 NA coding upstream 665061 5379149 ~ 5382140 (-)
CI01000299_05419449_05423414 ATP5J coding upstream 705315 5419403 ~ 5423414 (-)
G407475 NA non-coding downstream 3702 4704124 ~ 4704801 (-)
G407477 NA non-coding downstream 30275 4678018 ~ 4678228 (-)
G407476 NA non-coding downstream 31057 4677110 ~ 4677446 (-)
G407467 NA non-coding downstream 71078 4636610 ~ 4637425 (-)
G407420 NA non-coding downstream 122455 4571131 ~ 4586048 (-)
G407526 NA non-coding upstream 107953 4822041 ~ 4823551 (-)
G407562 NA non-coding upstream 225603 4939691 ~ 4939939 (-)
G407564 NA non-coding upstream 242010 4956098 ~ 4956365 (-)
G407565 NA non-coding upstream 243899 4957987 ~ 4996909 (-)
G407591 NA non-coding upstream 371306 5085394 ~ 5182362 (-)
G407413 NA other downstream 157782 4475994 ~ 4550721 (-)
G405053 NA other downstream 2690453 2017687 ~ 2018050 (-)
G404976 NA other downstream 2827515 1855639 ~ 1880988 (-)
G404784 NA other downstream 3048503 1659655 ~ 1660000 (-)
CI01000299_05428160_05443433 APP, APPA other upstream 727249 5427661 ~ 5443433 (-)
G407805 NA other upstream 1113748 5835889 ~ 5835989 (-)
CI01000299_06526127_06532048 CEP97 other upstream 1817913 6526127 ~ 6532048 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_038566 CABZ01102170.1 coding NW_003334033.1 KN150324.1 8882 ~ 24012 (+)