G407475


Basic Information

Item Value
gene id G407475
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4704124 ~ 4704801 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU468182
AGTCCATACAGAAAAAAGTATTTTATTTGGTTTATTAGGCTTAACATGCTGTATATCACACCTGTCACTCATTATGAGCTGTTTGCATTTACAGCATTGGGGAAAAAACAAACTTTTGTTTTATTCTTACTCATAAATTCTGAGCTATTTCAACTAAATTATGAACACACAGCAAGGATGGATATACATACAAAAACTTTTTATTTACAAACGTCAGAGATAATAAATAAAAACTGTGTATAAAAACAAGACTTTTGCAGCAATCCATGTTGTAAACAGCAGACAGAAGTTCAACAGCTGAATCCACAACAGGCCCACAAACGACACGCGTCACTCTGTTTTTCTCACGAATCCCATGTCAGTCGTCCTTCTTGTTCTCGATGAGCTCCTGCGTTTGCTGTGCGAGTTTCTTCTTCATCTCCATCTGCTGTTTCAGAGCAGCGTCTGCTTTCCTGCTCTGATAGATCTTTGCTCCAGCGAACGCCAAACACAGCAGCAGCGTCTTCGCTGCCAGGATGTACAGCAGCAACGGCACATTGTCCAAAGCCTGAGAACATACAATTACACACACCATTGTGACAAGAAGCATACAAGAAACCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU468182 True 600 lncRNA 0.40 2 4704124 4704801

Neighbor

gene id symbol gene type direction distance location
CI01000299_04658984_04668843 ATP1A1A.4, ATP1A1 coding downstream 35102 4658895 ~ 4669022 (-)
CI01000299_04645836_04651938 ATP1A1A.4, ATP1A1B, ATP1A1, ATP1A1A.1 coding downstream 52186 4645639 ~ 4651938 (-)
CI01000299_04603421_04609353 ATP1A1A.4, ATP1A1A.2, ATP1A1A.3, ATP1A1 coding downstream 94771 4603391 ~ 4609353 (-)
CI01000299_04587880_04594059 ATP1A1A.4, ATP1A1A.5, ATP1A1A.3, ATP1A1 coding downstream 110004 4587794 ~ 4594120 (-)
CI01000299_04456420_04468754 NA coding downstream 234674 4456229 ~ 4469450 (-)
CI01000299_04708767_04714088 RCAN1B coding upstream 3702 4708503 ~ 4714088 (-)
CI01000299_04741460_04746667 NA coding upstream 36646 4741447 ~ 4746667 (-)
CI01000299_04861862_04862244 NA coding upstream 156776 4861577 ~ 4862593 (-)
CI01000299_04913779_04927715 NA coding upstream 208572 4913373 ~ 4927715 (-)
CI01000299_05379545_05381902 NA coding upstream 674348 5379149 ~ 5382140 (-)
G407477 NA non-coding downstream 25896 4678018 ~ 4678228 (-)
G407476 NA non-coding downstream 26678 4677110 ~ 4677446 (-)
G407467 NA non-coding downstream 66699 4636610 ~ 4637425 (-)
G407420 NA non-coding downstream 118076 4571131 ~ 4586048 (-)
G407434 NA non-coding downstream 156318 4523411 ~ 4547806 (-)
G407526 NA non-coding upstream 117240 4822041 ~ 4823551 (-)
G407562 NA non-coding upstream 234890 4939691 ~ 4939939 (-)
G407564 NA non-coding upstream 251297 4956098 ~ 4956365 (-)
G407565 NA non-coding upstream 253186 4957987 ~ 4996909 (-)
G407591 NA non-coding upstream 380593 5085394 ~ 5182362 (-)
G407413 NA other downstream 153403 4475994 ~ 4550721 (-)
G405053 NA other downstream 2686074 2017687 ~ 2018050 (-)
G404976 NA other downstream 2823136 1855639 ~ 1880988 (-)
G404784 NA other downstream 3044124 1659655 ~ 1660000 (-)
CI01000299_05428160_05443433 APP, APPA other upstream 736536 5427661 ~ 5443433 (-)
G407805 NA other upstream 1123035 5835889 ~ 5835989 (-)
CI01000299_06526127_06532048 CEP97 other upstream 1827200 6526127 ~ 6532048 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G260 NA non-coding NC_056699.1 CM032068.1 1441088 ~ 1441512 (-)