CI01000299_04587880_04594059 (ATP1A1A.4, ATP1A1A.5, ATP1A1A.3, ATP1A1)


Basic Information

Item Value
gene id CI01000299_04587880_04594059
gene name ATP1A1A.4, ATP1A1A.5, ATP1A1A.3, ATP1A1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4587794 ~ 4594120 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_04587880_04594059.mRNA
AACTCCTCCCTAATTTTCCCAGAACACCTCCCCATTAAACAGGTGAGATGGCAGGGTATAAATGTGTGAACCAGTTTTGGACACACAGGGACTTCTGTCTCCAAAAGGCTCCAAGACAGGGGGACTAACCAGACTCCTGAAATCATTGGATTTTAGGTGGACATCAAGAAGAAAAATGGGGCTCGGGACGGGGAATGATAACTACAAATTGGCAGCAACTTCAGAAGATGGAGTCAAAAAGCCAAAAAGGGGGAAAAAGAATAAAAAGGACATGGAGGAACTTAAGAAAGAAGTGGAGCTGGAAGACCACAAGTTGACATTTGAAGAGCTTAATCGAAAATACGGCACTGATCTGACCAAGGGTTTGTCCATTTTCCGAGCAAAGGAAATCTTAGCCCGTGATGGACCAAATTCCTTGACTCCACCTGTTACGACTCCAGAATGGGTCAAGTTCTGCAGACAGCTCTTTGGTGGTTTTCAAACTCTGCTGTGGATTGGTGCCTTTCTTTGCTTCTTTGCATATTCAATCCAGGCTGCCTCTTCTGAAGAACCGGCAAATGACAATCTGTATCTGGGACTTGTGCTTGCTTTTGTTGTCACAATCAATGGATGCTTCTCATACTATCAAGAGCATAAGAGCTCTAGGATCATGGATTCTTTTAAGAACCTCGTTCCTCAGCAAGCCCTGGTTGTGCGTGATGGAGAGAAAAATATCATCAATGCTGAGGAGGTAGTCGTTGGTGATCTTGTGGAGGTCAAAAGTGGAGACCGAATTCCAGCTGATATTCGTGTCATCTCTGCACAAGGATGCAAGGTGGACAACTCTTCCCTCACTGGTGAATCTGAACCCCAGAGTCGTACTCCTGACTTTTCTAGTGAAAACCCCTTGGAGACAAGAAACATTGCATTTTTTTCTACCAACTGTGTTGAAGGTACTGCCAGAGGGATTGTCATCAACACCGGTGACCGTACCGTCATGGGTCGTATTGCCACTCTTGCCTCCAGCCTGGAAGGTGGACAGACACCAATTGCTAAAGAGATTGAGCACTTCATCCACATCATCACTGGTGTAGCTGTCTTCCTGGGCGTGACCTTCTTAATCTTGTCCCTGATCCTTGGCTACAATTGGTTGGAAGGGGTCATTTTCCTGATTGGAATCATTGTCGCTAATGTGCCTGAAGGTCTCCCTGCCACTGTAACTGTGTGTCTAACTCTGACTGCCAAACGAATGGCAAAGAAGAACTGCCTGGTGAAGAATCTGGAAGCCGTGGAGACTCTTGGCTCGACCACCACCATCTGCTCTGACAAGACTGGAACTTTGACCCAGAACCGAATGACCGTCGCTCACATGTGGTTTGACAACCATATTCATATAGCAGACACCACAGAGAACCAGACTGGAACCGCATTTGACAAGAGCTCTGCTACTTGGTCTGCTCTTGCACGTGTTGCTGGCTTGTGCAATCGTGCTGTCTTCCAAGCAAATCAGAGCCATCTCCCAGTCCTTAAGAAGGCTGACATTGGTGTGGCTATGGGTATTGCTGGATCTGATGTTTCCAAACAGGCTGCTGACATGATTCTTCTGGACGACAACTTTGCCTCAATTGTCACTGGAGTAGAAGAAGGCCGTCTGATCTTTGACAACTTGAAGAAGTCCATTGCCTACACGTTGACTAGTAAGATCCCTGAGATGTCACCCTTCCTCTTTTTTGTCCTTGTCGGTATTCCTCTACCTTTGGGCACCGTCACCATTCTCTGCATTGACCTGGGCACTGACATGGTTCCTGCTATCTCATTGGCCTATGAAACTGCCGAAAGTGACATCATGAAGCGACAACCCAGAAACGCTGAAACAGATAGGCTGGTGAATGAGAGGCTAATCAGTATGAGCTATGGACAAATTGGTATGATGCAAGCAGTTGGCGGGTTCTTTACCTACTTCGTAATTCTTGCTGAGAATGGATTCTTGCCCTGGGATCTGGTAGGAATTCGATTGGGCTGGGAAGACAGATTTCTCAATGACCTGGAAGACAGCTATGGCCAACAATGGACCTATGAGCGCAGAAAGATTGTGGAGTACACATGCCACACAGCCTTCTTTACCAGTATTGTGATTGTGCAGTGGACCGACTTGCTCATCTGCAAGACCAGAAGGCTTTCCATCCTACAGCAGGGAATGAAGCCAATGTGGTGGTTCTGTGCCTTCCCATATTCCCTGCTCATTTTCATCTATGATGAAGTTAGAAAATACCTCCTTAGGCAGAGCCCAGGAGGCTGGGTGGAACAAGAAACATACTACTAAAAGAAGAAGACTTTCTGTCGGGAACATGTGCAAAGGGACGTATCATTTTGAAAATATCAAAATTAATGTCAGTTTAAGTTAATAAA

Function

symbol description
atp1a1a.3 Predicted to enable P-type sodium:potassium-exchanging transporter activity. Predicted to be involved in cellular monovalent inorganic cation homeostasis and inorganic cation transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in neuromast mantle cell; neuromast support cell; and pronephric duct. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2DD. Orthologous to human ATP1A1 (ATPase Na+/K+ transporting subunit alpha 1).
atp1a1a.4 Predicted to enable P-type sodium:potassium-exchanging transporter activity. Predicted to be involved in cellular monovalent inorganic cation homeostasis and inorganic cation transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cardiovascular system; immature eye; integument; nervous system; and pronephros. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2DD. Orthologous to human ATP1A1 (ATPase Na+/K+ transporting subunit alpha 1).
atp1a1a.5 Predicted to enable P-type sodium:potassium-exchanging transporter activity. Predicted to be involved in cellular monovalent inorganic cation homeostasis and inorganic cation transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including immature eye; mucus secreting cell; nervous system; otic vesicle; and pronephros. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2DD. Orthologous to human ATP1A1 (ATPase Na+/K+ transporting subunit alpha 1).
atp1a1 Enables P-type sodium:potassium-exchanging transporter activity; chaperone binding activity; and steroid hormone binding activity. Involved in several processes, including cellular monovalent inorganic cation homeostasis; cellular response to steroid hormone stimulus; and ion transmembrane transport. Located in several cellular components, including T-tubule; apical plasma membrane; and lateral plasma membrane. Part of sodium:potassium-exchanging ATPase complex. Implicated in Charcot-Marie-Tooth disease type 2DD.

GO:

id name namespace
GO:1903416 response to glycoside biological_process

KEGG:

id description
K01539 ATP1A; sodium/potassium-transporting ATPase subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_04587880_04594059.mRNA True 2388 mRNA 0.46 16 4587794 4594120

Neighbor

gene id symbol gene type direction distance location
CI01000299_04456420_04468754 NA coding downstream 118344 4456229 ~ 4469450 (-)
CI01000299_04398464_04403711 NA coding downstream 184083 4393404 ~ 4403711 (-)
CI01000299_04370401_04385955 RADIL coding downstream 199774 4370401 ~ 4388020 (-)
CI01000299_04242809_04251680 ARGLU1 coding downstream 335929 4242197 ~ 4251865 (-)
CI01000299_04227918_04239792 EFNB2B coding downstream 348002 4227520 ~ 4239792 (-)
CI01000299_04603421_04609353 ATP1A1A.4, ATP1A1A.2, ATP1A1A.3, ATP1A1 coding upstream 9271 4603391 ~ 4609353 (-)
CI01000299_04645836_04651938 ATP1A1A.4, ATP1A1B, ATP1A1, ATP1A1A.1 coding upstream 51519 4645639 ~ 4651938 (-)
CI01000299_04658984_04668843 ATP1A1A.4, ATP1A1 coding upstream 64775 4658895 ~ 4669022 (-)
CI01000299_04708767_04714088 RCAN1B coding upstream 114383 4708503 ~ 4714088 (-)
CI01000299_04741460_04746667 NA coding upstream 147327 4741447 ~ 4746667 (-)
G407420 NA non-coding downstream 1746 4571131 ~ 4586048 (-)
G407422 NA non-coding downstream 24130 4504710 ~ 4563664 (-)
G407414 NA non-coding downstream 33717 4478989 ~ 4554077 (-)
G407434 NA non-coding downstream 39988 4523411 ~ 4547806 (-)
G407429 NA non-coding downstream 73447 4509122 ~ 4514347 (-)
G407467 NA non-coding upstream 42490 4636610 ~ 4637425 (-)
G407476 NA non-coding upstream 82990 4677110 ~ 4677446 (-)
G407477 NA non-coding upstream 83898 4678018 ~ 4678228 (-)
G407475 NA non-coding upstream 110004 4704124 ~ 4704801 (-)
G407526 NA non-coding upstream 227921 4822041 ~ 4823551 (-)
G407413 NA other downstream 37073 4475994 ~ 4550721 (-)
G405053 NA other downstream 2569744 2017687 ~ 2018050 (-)
G404976 NA other downstream 2706806 1855639 ~ 1880988 (-)
G404784 NA other downstream 2927794 1659655 ~ 1660000 (-)
CI01000299_04913779_04927715 NA other upstream 331848 4913373 ~ 4927715 (-)
CI01000299_05428160_05443433 APP, APPA other upstream 847217 5427661 ~ 5443433 (-)
G407805 NA other upstream 1233716 5835889 ~ 5835989 (-)
CI01000299_06526127_06532048 CEP97 other upstream 1937881 6526127 ~ 6532048 (-)

Expression


Co-expression Network