CI01000299_05478688_05502027 (ADAMTS5)


Basic Information

Item Value
gene id CI01000299_05478688_05502027
gene name ADAMTS5
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 5477482 ~ 5503268 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_05478688_05502027.mRNA
ACATTTTCACATTACCTAGTTTGTTTATTATTAGCTCTTGTAAGATAAAAAGAAGTCATCAATATAATGTTTTTAATCATTAAGAGAAGAGGAAGAGTTGTTGTAATAGAGTGTTGTTGACATGCCGTCATTTTACGCCGGACTGCTTCACAAACGAGGGTCAATTCAACACTGGATTTGCACAAAAGATTAACATGACGGCACGTGCTAGTGGATGAGTTGAATCAACTCCACAGCAACTACATAAATTTATCCACTAACCATTCAGAAACGTCTAAAAGTTGTAACTTCTTCCTGAGTCTCTCCATCAGTGTCGACTCCGGTTTGAACAATGTAAGGCTGAACACCGTTACTGACAATCCTCATTTTGGCTGCGTGAGATTCTCCAGCTTTGTTGTTGTTGAGCAACCGAAGCGTGAGCTGTTAAAGCTCCGCCCTCTTCTGGAAAGGGGGCCGGGAGCAGCAGCTCATTTGCATTTAAAGGGACACACACACACACAAAAACGGCGTGTTTTCGCTCACACCCAAATAGGGGCAAATTTGACAAGCTATGATAAATGATCTGTGGGGTATTTTGAGCTGAAACTTCACAGACACATTCTGGAGACACCAGAGATTTATAGGTCCCCTTTAACAGATATACTGTACAACTTTATTTTTAATAATGTATTATTAAATGTCGCAATTAACATTAAAGAATGCTTTAGAAGTTTTTTTCATTGTTTGTTCATGTTAACTAATGGAGCCTATTGTAAACCATCATGTTCATTCACAAGTCACATTTCAACATGTTTCCCTATGTTTGTGAGGACATTTTCAAACATTTGGCTTCTAACAAGAGATGAACCTGTAAACTGAACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTGGGAAAGAATGAGAGGAGGAGGTCTGGAGTGGAGAGTGAGCGCAAAGGGGCAGGACTCTCTCTCTTTCTCTCTCTCTCTCTCTATTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTGGTGCTTTTAAGAGGAAACTTTGTGTTTTGTTCTTCAAGTTCACTTTAGTTCTCGCTGCACTCTCGTGGTGTTTTCTTTGCCTTCGTGTATTTATTTCACTGACTCGTGAGATGCGCACCGGGACTAATGGATCAGTCCGCCTCTGTTTGCTGGAATTCTTCATCTTAAAGCTGGATTTCGGATTGTAATGTTTCCAAAAGTTTTCATGAACTACATGGAATAATAATGTGGCAGATTGTTTTGTTGTGCTGCGCTCTGGACGGTTCCTTTGCGTTCAGCGCGTTCCGTCCACCTGCGAACGCGTCTCTCCTCACACCTGCCCAGCGGAGCGACGGCGTCGTGCGGACTGTGGATCGGATTTATCACGGGGGAGGAAAAGCCGGGTACCTTCTGTACATGGACGAGCAGCGCTTTCTTCTGGATATGGAGCGGGACGAGTCGGTACTGTCTCATCACTTTGGTTCGAACGCGAACGCGCCGCCAATGCGCCGGGAATGCGTTTACCGCGGCACCGTCAATTCAAACGCGGAGTCTCTTGCGGTTTTCAATCTGTGCGGCGGTGGACTTGATGGGTTTTTCGCGGTTGATCACGCCCGGTACACAATCACACCGCTCATCCGGGCGAAGGGCCACGAGAATGACGTGCACATCGTCGAGGACGCCGACGCGACGCGTGCTCTCCACTATTACACCCGGGAACGCTTCAGTTTCGAAGAGATGCCCGCGCGACACAGCTGCGGCACGCGTGACCGAAAAACTCGCAGGGATAAAAAGCGGAGCGCACGGGGGAAGCGGAAACGCGATGAGGACGCGCGCGGACGCAGATGGTGGACAAAGTTTGCGAAGCCCGACGCTTCGCTGACGCGACGCAGGAGGTCCGTGTCTCGCGCGCGGCACGTGGAGCTGCTGCTGGTCGCGGATGCGTCCATGACGAAGAAATACGGGAAGGACCTGCATCATTACCTGTTGACGCTCGCGTCCATCGCGTCCAAACTCTACGGTCACGCCAGCATCGAGAACCCCATCCGCCTGTCGGTGGTTAAAGTGGCGATTCTGTCCGAGAACGAGAAGGGGATCGATGTGTCCAAAAACGCCGCCGCGACGCTCAAGAGCTTCTGTAAGTGGCAGAATCAGCAGAATCCGCTGGATGACGATCATCAGCATCACCATGACGCGGCGATCCTCTTCACCAGGCAGACGAGGCTTGTGGTGCATGATCTGTGCGGTCATCACTCGTGTGACACTCTCGGCATGGCTGACGTAGGCACCGTATGTTCTCCAGAGAGGAGCTGTGCCATCATCGAGGACGACGGCCTTCACGCAGCATTCACCGTGGCACATGAGATCGGGCACCTGCTGGGTCTGTCCCACGATGACTCAAAGTTCTGCGAGGAGCGCTTCGGCTCCACTGAGGACAAGCGACTGATGTCGTCCATCCTGACCTCCATCGACGCGTCCAAACCCTGGAGCCGCTGCACGTCCGCCACCATCACGGACTTCTTCGACGACGGCAATGCCGAGTGTTTGTTGGACGTCCCTCGTCTGCCTCTTCTGGGTCCCGAGGAGCTTCCCGGTCAGAGTTATGACGCCGTGCAGCAGTGCCGTCTAGCCTTTGGCCCCGAGTACACCATGTGTCCCGGGATGGACGTGTGCGCCCGCCTGTGGTGTGCCGTCATTAGGAAGGGCCAGATGGTGTGTCTGACCAAAAAACTGCCCGCTGTTGAAGGAACGCCGTGTGGGAAGGGAAGAATCTGTCTGCAGGGGAAATGTGTGGACAAGACCCGAAAAAGACACTACTCGACGTCTAACCACGGCAGCTGGAGCTCCTGGGGTCCATGGGGTTCGTGTTCCCGTACCTGCGGCGGCGGCGTCCAGTTTGCTCATCGTCTCTGCAACAACCCCCCTCCCCGAAACAACGGACGCTACTGCACCGGAAAGAGAGCCGTCTACAGGTCCTGTAACATCACGCCATGCCCTACAGCCAGTAAGAGCTTCAGACAGGAGCAGTGTGAGGTGCGGAACGGCCCTCAGACGGATCCTAAAGGAGTGAAGACCTTCGTGGAATGGGTGCCGAAGTTTGCCGGCGTTCTTCCCAAAGACATGTGCAAGCTCACCTGCAGGGCCAAAGGGACGGGATACTATGTAGTGTTCGCACAGAGGGTGGTTGATGGGACGGAGTGCCGGCCGTACAGCAGTTCAGTGTGTGTGAAAGGGAAGTGCGTTCGCACTGGCTGCGATGGGATCATCGGCTCTAAACTTCAGTACGACAAGTGTGGCATTTGCGGTGGCGACGGAAACAGCTGCATCAAAGTGGCTGGAAATTTCACCAAGAAGAGTAAGGGCTACACTGATGTGGTGAAGGTCCCCGAGGGTTCGACACACCTTAAGGTCCGGCAGTACAAAGCAAAGGGCCAGTCGCGCTACACGGCGTACCTCGCCCTGCGGCGGCCCGGAGGAGAATACCTGCTGAACGGGAAGTTCATGATCTCCACGTCCGAGACCATCGTCCCCCTCAAAGGCTCGGTTCTCAACTACACCGGCTGGAGTCAGCGGGACGAGGCCCTTCACAGCATGGGCCCCGGGGCCCTTCAGGAGAGCCTGCTGGTGCAGATTCTGGCCACGGACTCCAAGAAACCACTAGACATCCGCTACAGCTTCTTCATGCCCCGCAAAACACCGCTTCCACCTCGGACATCTGCCGCAGCTTCGGGCACCGCCGCGGCTTTGTCATCGGCGGAGTTGGTGACGTTTACAACTGAGGTTCCTCCTCCGACAACGACTGAGCCTCCTCTTCCGACGACGACACCCGTGGGGCCACGCTGGGTGACGGGATCATGGATGACGTGCTCCAGAACTTGCGATACGGGTTGGCAAAGTCGCACAGTTCAGTGCAAAGACCCTCAAGGGAAGCTGGCCAAGAGTTGCCCGCTCAGCACCCGGCCGCCGGCCTTCAAACACTGCCTGATTAAAAAGTGCTGAGGACGTAGAGCACGTAGACTGAACCCTCGTGGACATGCAGTTGCATTTGTATAAGTGCTCGAAACACAATCACTGTGGATTCTGCACATTTTATGACTTGGACAAGGAGCTTTGGCTTTAGCCTTGAATGTGGCAACGTGTGACCACACCCCCTTGACAAAGCCACACCCTCTGGTCCATATGACACGCCCCTTGAGTTCACACTGGCAGTCATTTAAATGTTACTGTAGTGTTTGATGGGTAACACTTTACAATAAGGTCCATTAGTTAACTTTAGATAATGCATTAACTAACAATAAGCAAGACATTTGGGTAGCACTTTATGTTACAGTGTCCTTGTTACACGTTACATGTAGTTACTAAAAATTACATGCAACTAACCCTAAACCATACTTAATCCTAACCCTAACCCCATAGTAAGTACATGTAGTTAATTAATATTACTCAGTACTTAAATGTATAATTACACTGTAACAAGGACACCTTAAAACAAAGTGTAACCTACATTTGTTACAGTATTTAACGTCTGTTAATAAAAATACAACTGTTCATTGTTAGTTCATGTCAGACACAGCTTTTGATTTTATGATTAACATTAAGCTTTAGAAGTATTTTTCATTTATGGTGACTAATGTTTACAAATGGAACCTTTTTGTACATTGTTACCGTTTGATGTTACAATCAGTTCTGGTAACACTTTATTTTAAGGTGACTTAGTTAAACGTTACATGAACTTACTATATTAACAACTGTAAAATATGCATAATTACAAGCAACTATCCCTAACCTTAACCCTAGAGTAAGTACATGTAGTTAATTAATATTACTCAGACCTTATTTGTGTACTGTAACAACGTCACCTTAAAATAGTGTAACTGCCATTCCAAATCGACCGTAGAGCTGCACGATTAATCGCGTTTTAAACACGATTTCTGCTACTTTTTATTAATTAAGCATTATTTTCTGCAATATTATAAATCCAAACATGAATCTTGTGGTTGCTGAATAAATCTGCAACCTCTGTGTGACAATACAAAGTCTTTTTGTTGTTGTTTTAATAGTAAAATGTAAACGTAATTTGGAATTATAGGAATTAATGTTAGGAATTTCACTGGTTTGCTTTTGAGAGAAGCTTTTTTAAGGTTCTACCAGTTTTCATAATGTAAAATAGACCCTGCATATATATATACATATATTCTGATTAAA

Function

symbol description
adamts5 Is expressed in several structures, including digestive system; eye; heart; pleuroperitoneal region; and thymus.

GO: NA

KEGG:

id description
K08620 ADAMTS5; a disintegrin and metalloproteinase with thrombospondin motifs 5

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_05478688_05502027.mRNA True 5201 mRNA 0.49 9 5477482 5503268

Neighbor

gene id symbol gene type direction distance location
CI01000299_05466693_05471714 ADAMTS1 coding downstream 5495 5465642 ~ 5471987 (-)
CI01000299_05457285_05462908 NA coding downstream 13991 5456864 ~ 5463491 (-)
CI01000299_05428160_05443433 APP, APPA coding downstream 34049 5427661 ~ 5443433 (-)
CI01000299_05419449_05423414 ATP5J coding downstream 54068 5419403 ~ 5423414 (-)
CI01000299_05379545_05381902 NA coding downstream 95342 5379149 ~ 5382140 (-)
CI01000299_05512316_05521322 NA coding upstream 8783 5512051 ~ 5521322 (-)
CI01000299_05602070_05604608 NA coding upstream 98715 5601983 ~ 5604615 (-)
CI01000299_05739937_05770480 MRPL39 coding upstream 236540 5739808 ~ 5770807 (-)
CI01000299_05802706_05815472 MRPL16 coding upstream 299236 5802504 ~ 5815472 (-)
CI01000299_05818562_05822413 NA coding upstream 315138 5818406 ~ 5823867 (-)
G407669 NA non-coding downstream 59111 5413334 ~ 5418371 (-)
G407591 NA non-coding downstream 295120 5085394 ~ 5182362 (-)
G407565 NA non-coding downstream 480573 4957987 ~ 4996909 (-)
G407564 NA non-coding downstream 521117 4956098 ~ 4956365 (-)
G407734 NA non-coding upstream 49360 5552628 ~ 5554845 (-)
G407764 NA non-coding upstream 131572 5634840 ~ 5639866 (-)
G407848 NA non-coding upstream 270981 5774249 ~ 5775541 (-)
CI01000299_05896205_05898855 NA non-coding upstream 318307 5896043 ~ 5898857 (-)
G407858 NA non-coding upstream 426371 5929639 ~ 5930546 (-)
CI01000299_04913779_04927715 NA other downstream 548664 4913373 ~ 4927715 (-)
G407413 NA other downstream 926761 4475994 ~ 4550721 (-)
G405053 NA other downstream 3459432 2017687 ~ 2018050 (-)
G407805 NA other upstream 324568 5835889 ~ 5835989 (-)
CI01000299_06526127_06532048 CEP97 other upstream 1028733 6526127 ~ 6532048 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000926 adamts5 coding NC_007112.7 CM002885.2 691738 ~ 714626 (-)