G603


Basic Information

Item Value
gene id G603
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 2245339 ~ 2246590 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU906
aaagacgTCAGACAAAGACGAGGCCCGTTTCAGAGGATGGGAATATCTCGAGAGCGCTCGTCCTCTCTGAACGCGGCGGGTCGAGGAAGGAAGAGAGAGCAGGTTCTGGTCCGGACGTGACGGAGGCCCCAGAGCGTCCCGGTTCGGGTTTAATGCTAATCGTGATAGGGGTTTGTGCTGTTAAACACCTATGCTGTTAGCATTAGTCCTGCGCCGGGGACCGAACCTCCAGAAACACCTGCTGCTTCTCTCCTTTATACCTCGCTCTCACTTCCTCTGTTAGGTTTGATGGACGCGTGCGAGAGAATGAGGAcggtttcttcttttttcccctcaacgAGCAGATGTACTGTTTATCGTCGCGATTTAAATGGCGTTTGGGCCCAGACGTGAGCTGTGGTTTCTGTCTGTCGTGCTTCAGGAGCTCTTCTAGTAATCTGAAAGCCGCGGGTTCGAATTCTTCAAGCGGTGATTCATAAAAGACCCCCGGGACGGTCCCTGGAGTGAACCGGCGCAGGAAAAACCCTTAAAACCATCACAAACTAAGCAGAAATACGGCATGCGCTCTCAACAATAAAGCTTCCATGTCGTCACTGAAAGCTGTTTCGGGTCACAAAGAAACTTAGTTAGAAAtgccaccttttttttttagtaataaacaCTTAGTTAAGTCACACATCTGTAGAGTTTTTACATCACTTGTTTAATAACGGTGGGTTTTTAAGGTGCTGTAGATGGGTTTTTCCTTTTGAcacatatttgttgtttatatattttgttttgtgtttgctcaAAAAACCAAAGAAGAAGTGGAGCGGCttactggaaaaaaagaatagcAATAAATCGGCTGCGGTTaaagttttcatgttttttttgtacagaaacCACACACCAATCataactcaaacacacacttgaaAGCAAACTATCAGAATGAAATCACATTTCAGTAAATGACGGAGATTTTTACATAATCAGAGAATATTTGCTCGTCATTCGGTGactttattgtttgttttaagtaaaCCATTCAAGATTTCGACAGGAAATAATGCAAGCGTTACACAGAATCCAGATGATGggcattaaagtgttttttt

Function

GO: NA

KEGG:

id description
ko04668 TNF signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU906 True 1103 lncRNA 0.52 2 2245339 2246590

Neighbor

gene id symbol gene type direction distance location
mrpl39 mrpl39 coding downstream 768 2239138 ~ 2244571 (-)
jam2a LOC107751072,LOC107593737 coding downstream 9848 2224089 ~ 2235491 (-)
LOC122342174 adamts5,LOC107751075,LOC107593743 coding downstream 89396 2151651 ~ 2155943 (-)
n6amt1 n6amt1,LOC107563652,LOC107727005,LOC107698915,LOC107689945,LOC107751077 coding downstream 276477 1962314 ~ 1968862 (-)
wu:fa56d06 LOC107555251,LOC107751082 coding downstream 633257 1605876 ~ 1612082 (-)
LOC122351091 cenpq,LOC107748325,LOC107665818 coding upstream 14127 2260717 ~ 2267466 (-)
mrpl16 mrpl16 coding upstream 21672 2268262 ~ 2271714 (-)
txnl4b txnl4b coding upstream 27783 2274373 ~ 2276353 (-)
blzf1 blzf1 coding upstream 35345 2281935 ~ 2286119 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822,LOC107748328 coding upstream 63665 2310255 ~ 2330014 (-)
G554 NA non-coding downstream 25610 2188501 ~ 2219729 (-)
G600 NA non-coding downstream 30428 2214345 ~ 2214911 (-)
G567 app,LOC107698920,LOC107593741 non-coding downstream 41421 2191833 ~ 2203918 (-)
G584 adamts5,LOC107751075,LOC107593743,LOC107698897 non-coding downstream 71674 2169955 ~ 2173665 (-)
G402 NA non-coding downstream 178481 2066537 ~ 2066858 (-)
G559 ercc5 non-coding upstream 46334 2292924 ~ 2293517 (-)
LOC122349938 NA non-coding upstream 87752 2334342 ~ 2342289 (-)
G614 NA non-coding upstream 102610 2349200 ~ 2360332 (-)
G563 NA non-coding upstream 123044 2369634 ~ 2371751 (-)
G617 NA non-coding upstream 131841 2378431 ~ 2379941 (-)
LOC122343438 son,LOC107698912,LOC107555269,LOC107698212,LOC107571887,LOC107709257,LOC565999,LOC107751080 other downstream 640355 1592069 ~ 1604984 (-)
mbnl2 mbnl2,LOC107677847,LOC107653675,LOC107559795,LOC107555253 other downstream 1013692 1076188 ~ 1231647 (-)
LOC122342053 trim25l,LOC107582366,LOC107746627,LOC107557130,LOC107686775,LOC108430858,LOC107723752 other downstream 1496975 738137 ~ 748364 (-)
G67 NA other downstream 1809214 435808 ~ 436125 (-)
G20 NA other downstream 2058254 186420 ~ 187085 (-)
G654 LOC107751054,LOC107570078,LOC107662112 other upstream 442175 2688765 ~ 2689464 (-)
gpc5a LOC107677851,LOC107658649,LOC107730387,LOC107553999,LOC107560792,LOC107739379 other upstream 889918 3136508 ~ 3284786 (-)
G782 slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534 other upstream 1761250 4007840 ~ 4014287 (-)
G820 NA other upstream 2051720 4298310 ~ 4299193 (-)
mdh1b mdh1b other upstream 2709529 4956119 ~ 4960210 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000024 dre-mir-155 non-coding NC_007112.7 CM002885.2 576444 ~ 576521 (+)
grasscarp (Ctenopharyngodon idella) G407848 NA non-coding CI01000299 null 5774249 ~ 5775541 (-)
mexican tetra (Astyanax mexicanus) G340607 NA non-coding NW_019172945.1 APWO02000037.1 368197 ~ 369458 (-)