mrpl16 (mrpl16)


Basic Information

Item Value
gene id mrpl16
gene name mrpl16
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 2268262 ~ 2271714 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236686.1
CTGAATTTCACCGACGGACCGGATGTTGATCAAACATGGCGGCGACCTTGTGCGAGAGCCTGCTGTAAATCACAACCGAGACAAACATGAAGATTCATACCTGTTAATACTTTATACGTCTAATTAAATTCTAACATCAGCCATGTTCTCAGCACTAAAGCGCGCGTTTCTGGGTTCTCTCCAGTCATCAAGCCAAGCAGATGTTCTTCAGAGTAACCTGAAGCTCCTGTCAGCAGGACTGAGGACTTATGAAGTCCCACCAAACTTCAGTGATGTGGTTCTACCAGAAAAGCCCAAGCTGAAGTTCATGGATAAGGTCCCGAACCTGAAACAAGCGAAGAAGGAGATGAAGAAGCTGCGTGACATCCAGGGACCGGCCAAAAGCGGCACTACCTTCAGGGACGGCCAGTACGGGATAGTGGCTCTGGGTGGAGGTTATCTTCAGTGGGGTCACATGGAGATGATGAGGCTGAACATCAACCGCCGCATGGACGCCAGCCGGACGTTTGCTGTGTGGCGCATCAAAGCCCCGCACAAACCCATCACGAGGAAGGGCCTGGGCCAGCGCATGGGCGGCGGGAAGGGCGTCATCGACCACTACGTGACCCCGGTCAAATACGGCCAGCTGGTGGTGGAGGTCGGAGGTCGCGTGGAGATGGCCGAGGTGGAGACCGTGCTCAAAGAAGTGGCCAAGAAGCTTCCTTTCCCAGCCAAGgTGGTGAGCAGAGAGAGTCTGGCCGAGATGTACGAGGATCAGGCCAAATGGGCCGCAGACAACCAGAACCCCTGGACCTTCCAGAGAGTGGCCCGCTCCAACATGCTGGGCATCCGCAAAGTCCTGAGCCCCTTCGACATCCACAACCACGGGCGCTTCACCGGGAAGTTCTTCAACCCCGGGCGGGTGTAGCGTGTCTGAAAAATGACAGCATCAGCGCTTCTCGCGGCCAGGATGTGGTGCAGAGCGCTCTAATAGACTCCTGATTAATATCTGCTGCTCCGAGGGGCCTGCCGTTCACTTATCAGGCGTCTTCTGCAGCGCTCGGCAGATTTGATCATCCTGGAGAGGTTACGATAAATCGGAGGGATCGGCCGATTTCTTTGATCAGATGTGCAggagtgtgtgttctgtgtatatgtTGTGAGACCAATACTAAATAAACCTGATTTCTTTGCA

Function

symbol description
mrpl16 Predicted to enable rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in mitochondrial translation. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL16 (mitochondrial ribosomal protein L16).

NR:

description
39S ribosomal protein L16, mitochondrial

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0019843 rRNA binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02878 RP-L16, MRPL16, rplP; large subunit ribosomal protein L16

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236686.1 True 1174 mRNA 0.54 5 2268262 2271714

Neighbor

gene id symbol gene type direction distance location
LOC122351091 cenpq,LOC107748325,LOC107665818 coding downstream 796 2260717 ~ 2267466 (-)
mrpl39 mrpl39 coding downstream 23691 2239138 ~ 2244571 (-)
jam2a LOC107751072,LOC107593737 coding downstream 32771 2224089 ~ 2235491 (-)
LOC122342174 adamts5,LOC107751075,LOC107593743 coding downstream 112319 2151651 ~ 2155943 (-)
n6amt1 n6amt1,LOC107563652,LOC107727005,LOC107698915,LOC107689945,LOC107751077 coding downstream 299400 1962314 ~ 1968862 (-)
txnl4b txnl4b coding upstream 2659 2274373 ~ 2276353 (-)
blzf1 blzf1 coding upstream 10221 2281935 ~ 2286119 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822,LOC107748328 coding upstream 38541 2310255 ~ 2330014 (-)
LOC122342255 LOC107748337,LOC107665801,LOC107573435,LOC107694467 coding upstream 135100 2406814 ~ 2419671 (-)
cenpe LOC107751066,LOC107573438,LOC107577987,LOC107654461 coding upstream 148762 2420476 ~ 2440899 (-)
G603 NA non-coding downstream 21672 2245339 ~ 2246590 (-)
G554 NA non-coding downstream 48533 2188501 ~ 2219729 (-)
G600 NA non-coding downstream 53351 2214345 ~ 2214911 (-)
G567 app,LOC107698920,LOC107593741 non-coding downstream 64344 2191833 ~ 2203918 (-)
G584 adamts5,LOC107751075,LOC107593743,LOC107698897 non-coding downstream 94597 2169955 ~ 2173665 (-)
G559 ercc5 non-coding upstream 21210 2292924 ~ 2293517 (-)
LOC122349938 NA non-coding upstream 62628 2334342 ~ 2342289 (-)
G614 NA non-coding upstream 77486 2349200 ~ 2360332 (-)
G563 NA non-coding upstream 97920 2369634 ~ 2371751 (-)
G617 NA non-coding upstream 106717 2378431 ~ 2379941 (-)
LOC122343438 son,LOC107698912,LOC107555269,LOC107698212,LOC107571887,LOC107709257,LOC565999,LOC107751080 other downstream 663278 1592069 ~ 1604984 (-)
mbnl2 mbnl2,LOC107677847,LOC107653675,LOC107559795,LOC107555253 other downstream 1036615 1076188 ~ 1231647 (-)
LOC122342053 trim25l,LOC107582366,LOC107746627,LOC107557130,LOC107686775,LOC108430858,LOC107723752 other downstream 1519898 738137 ~ 748364 (-)
G67 NA other downstream 1832137 435808 ~ 436125 (-)
G20 NA other downstream 2081177 186420 ~ 187085 (-)
G654 LOC107751054,LOC107570078,LOC107662112 other upstream 417051 2688765 ~ 2689464 (-)
gpc5a LOC107677851,LOC107658649,LOC107730387,LOC107553999,LOC107560792,LOC107739379 other upstream 864794 3136508 ~ 3284786 (-)
G782 slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534 other upstream 1736126 4007840 ~ 4014287 (-)
G820 NA other upstream 2026596 4298310 ~ 4299193 (-)
mdh1b mdh1b other upstream 2684405 4956119 ~ 4960210 (-)

Expression


Co-expression Network