RNA id: XM_043236686.1


Basic Information

Item Value
RNA id XM_043236686.1
length 1174
RNA type mRNA
GC content 0.54
exon number 5
gene id mrpl16
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 2268262 ~ 2271714 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGAATTTCACCGACGGACCGGATGTTGATCAAACATGGCGGCGACCTTGTGCGAGAGCCTGCTGTAAATCACAACCGAGACAAACATGAAGATTCATACCTGTTAATACTTTATACGTCTAATTAAATTCTAACATCAGCCATGTTCTCAGCACTAAAGCGCGCGTTTCTGGGTTCTCTCCAGTCATCAAGCCAAGCAGATGTTCTTCAGAGTAACCTGAAGCTCCTGTCAGCAGGACTGAGGACTTATGAAGTCCCACCAAACTTCAGTGATGTGGTTCTACCAGAAAAGCCCAAGCTGAAGTTCATGGATAAGGTCCCGAACCTGAAACAAGCGAAGAAGGAGATGAAGAAGCTGCGTGACATCCAGGGACCGGCCAAAAGCGGCACTACCTTCAGGGACGGCCAGTACGGGATAGTGGCTCTGGGTGGAGGTTATCTTCAGTGGGGTCACATGGAGATGATGAGGCTGAACATCAACCGCCGCATGGACGCCAGCCGGACGTTTGCTGTGTGGCGCATCAAAGCCCCGCACAAACCCATCACGAGGAAGGGCCTGGGCCAGCGCATGGGCGGCGGGAAGGGCGTCATCGACCACTACGTGACCCCGGTCAAATACGGCCAGCTGGTGGTGGAGGTCGGAGGTCGCGTGGAGATGGCCGAGGTGGAGACCGTGCTCAAAGAAGTGGCCAAGAAGCTTCCTTTCCCAGCCAAGgTGGTGAGCAGAGAGAGTCTGGCCGAGATGTACGAGGATCAGGCCAAATGGGCCGCAGACAACCAGAACCCCTGGACCTTCCAGAGAGTGGCCCGCTCCAACATGCTGGGCATCCGCAAAGTCCTGAGCCCCTTCGACATCCACAACCACGGGCGCTTCACCGGGAAGTTCTTCAACCCCGGGCGGGTGTAGCGTGTCTGAAAAATGACAGCATCAGCGCTTCTCGCGGCCAGGATGTGGTGCAGAGCGCTCTAATAGACTCCTGATTAATATCTGCTGCTCCGAGGGGCCTGCCGTTCACTTATCAGGCGTCTTCTGCAGCGCTCGGCAGATTTGATCATCCTGGAGAGGTTACGATAAATCGGAGGGATCGGCCGATTTCTTTGATCAGATGTGCAggagtgtgtgttctgtgtatatgtTGTGAGACCAATACTAAATAAACCTGATTTCTTTGCA

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0019843 rRNA binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02878 RP-L16, MRPL16, rplP; large subunit ribosomal protein L16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU906 lncRNA downstream 21672 2245339 ~ 2246590 (-) True G603
TU812 lncRNA downstream 48533 2188501 ~ 2219729 (-) True G554
TU837 lncRNA upstream 21210 2292924 ~ 2293517 (-) True G559
XR_006251541.1 lncRNA upstream 62628 2334342 ~ 2342289 (-) True LOC122349938
TU917 lncRNA upstream 77486 2349200 ~ 2360332 (-) True G614
TU847 lncRNA upstream 97920 2369634 ~ 2371751 (-) True G563
TU921 lncRNA upstream 106717 2378431 ~ 2379941 (-) True G617
XM_043247959.1 mRNA downstream 796 2260717 ~ 2267466 (-) False LOC122351091
XM_043247968.1 mRNA downstream 862 2260717 ~ 2267400 (-) True LOC122351091
XM_043245035.1 mRNA downstream 23691 2239138 ~ 2244571 (-) True mrpl39
XM_043247680.1 mRNA downstream 32771 2224089 ~ 2235491 (-) True jam2a
XM_043247686.1 mRNA downstream 32775 2224089 ~ 2235487 (-) False jam2a
XM_043236695.1 mRNA upstream 2659 2274373 ~ 2276353 (-) True txnl4b
XM_043239459.1 mRNA upstream 10221 2281935 ~ 2286067 (-) False blzf1
XM_043239451.1 mRNA upstream 10224 2281938 ~ 2286119 (-) True blzf1
XM_043239379.1 mRNA upstream 38541 2310255 ~ 2330014 (-) False tpp2
XM_043239369.1 mRNA upstream 38541 2310255 ~ 2330014 (-) False tpp2
XR_006250784.1 other downstream 663278 1594758 ~ 1604984 (-) False LOC122343438
XR_006252053.1 other downstream 1138625 1129499 ~ 1129637 (-) True LOC122353706
XR_006252043.1 other downstream 1640444 627700 ~ 627818 (-) True LOC122353666
unassigned_transcript_1 other downstream 1829134 439054 ~ 439128 (-) True trnag-gcc
TU105 other downstream 1832137 435808 ~ 436125 (-) True G67
TU999 other upstream 417051 2688765 ~ 2689464 (-) True G654
TU1152 other upstream 1736126 4007840 ~ 4014287 (-) True G782
TU1193 other upstream 2026596 4298310 ~ 4299193 (-) True G820
XR_006252050.1 other upstream 3505857 5777571 ~ 5777657 (-) True LOC122353693
XR_006251180.1 other upstream 3574362 5846076 ~ 5853244 (-) False LOC122346875

Expression Profile