RNA id: XM_043236695.1


Basic Information

Item Value
RNA id XM_043236695.1
length 761
RNA type mRNA
GC content 0.48
exon number 3
gene id txnl4b
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 2274373 ~ 2276353 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACACACTGAAGCTGGATCGCGCGCACAGTGTAGGAACTATTGATGGCGTTTCTAGTCGGCTCGTTTATAGCGTTGCGCCTCACGCTAGTAAACATCCGCCGGAGTTCACGCGCACGTTCCCTTAACTCTGTCTGTATCTCAGAGCGAATTCAGTACAAGGGCCATGAGTTTCTTCCTCCCCAAACTGTCGTGTAAAAAAGACATCGATGACGCCATCAAATGCGTCGCGGAGAAGGTTTTAGTGCTGCGCTTCGGCAGAGATGAAGACTCTGTGTGTTTACAGCTCGACGAGATCCTGTCAAAGACGGCTCATGATCTGAGTAACATGGCCAGTGTTTATCTGGTGGATGTGGACACGGCCGCGGTTTACACCAGATACTTCGACATCAGCTTCATTCCCTCAACGGTGTTCTTCTTCAACGGACAGCACATGAAGGTGGACTATGGATCTCCGGATCATACCAAGTTTGTGGGAAGCTTCAAAACCAAGCAGGACTTCATGGATCTGATCGAAGTGATCTATCGAGGCGCCATGAGAGGAAAACTGATCGTCCAAAGCCCCATCGACCCGAGAAACATCCCTAAATATGATCTACTGTACCACGACATCTAGAGAGTGAGCCAGCACACCTTCTGATGGAGAGACGAGGAAGTAGTTTCCCGTGGAAACGATCAACAGTCTGATGCGCTGCTTCTGTGtattgtgaacttttttttatggtatttacaaaaagtaaagcttGTTGATTTGACACGGACT

Function

GO:

id name namespace
GO:0005681 spliceosomal complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU906 lncRNA downstream 27783 2245339 ~ 2246590 (-) True G603
TU812 lncRNA downstream 54644 2188501 ~ 2219729 (-) True G554
TU837 lncRNA upstream 16571 2292924 ~ 2293517 (-) True G559
XR_006251541.1 lncRNA upstream 57989 2334342 ~ 2342289 (-) True LOC122349938
TU917 lncRNA upstream 72847 2349200 ~ 2360332 (-) True G614
TU847 lncRNA upstream 93281 2369634 ~ 2371751 (-) True G563
TU921 lncRNA upstream 102078 2378431 ~ 2379941 (-) True G617
XM_043236686.1 mRNA downstream 2659 2268262 ~ 2271714 (-) True mrpl16
XM_043247959.1 mRNA downstream 6907 2260717 ~ 2267466 (-) False LOC122351091
XM_043247968.1 mRNA downstream 6973 2260717 ~ 2267400 (-) True LOC122351091
XM_043245035.1 mRNA downstream 29802 2239138 ~ 2244571 (-) True mrpl39
XM_043247680.1 mRNA downstream 38882 2224089 ~ 2235491 (-) True jam2a
XM_043239459.1 mRNA upstream 5582 2281935 ~ 2286067 (-) False blzf1
XM_043239451.1 mRNA upstream 5585 2281938 ~ 2286119 (-) True blzf1
XM_043239379.1 mRNA upstream 33902 2310255 ~ 2330014 (-) False tpp2
XM_043239369.1 mRNA upstream 33902 2310255 ~ 2330014 (-) False tpp2
XM_043239360.1 mRNA upstream 33902 2310255 ~ 2330014 (-) True tpp2
XR_006250784.1 other downstream 669389 1594758 ~ 1604984 (-) False LOC122343438
XR_006252053.1 other downstream 1144736 1129499 ~ 1129637 (-) True LOC122353706
XR_006252043.1 other downstream 1646555 627700 ~ 627818 (-) True LOC122353666
unassigned_transcript_1 other downstream 1835245 439054 ~ 439128 (-) True trnag-gcc
TU105 other downstream 1838248 435808 ~ 436125 (-) True G67
TU999 other upstream 412412 2688765 ~ 2689464 (-) True G654
TU1152 other upstream 1731487 4007840 ~ 4014287 (-) True G782
TU1193 other upstream 2021957 4298310 ~ 4299193 (-) True G820
XR_006252050.1 other upstream 3501218 5777571 ~ 5777657 (-) True LOC122353693
XR_006251180.1 other upstream 3569723 5846076 ~ 5853244 (-) False LOC122346875

Expression Profile