XLOC_012390


Basic Information

Item Value
gene id XLOC_012390
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 48607713 ~ 48608147 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025008
TTTCTGTATTCATATTTGTTCTGCTGGCATTTTGCAGCGTTGAGCAAACTCCCGCTTTACTCATTGTGAGATCCGGAGAGTCCTGCAATATCTCCTGTTCTCACGGTATCACCAGCTACAACACCATACTGTGGTACTACCAGCACGAGGACGGCCAGGGCATGCACAGTATTGGATATTCCTTCCATTCTTCTCACACTCTGGAGAATGTAGAAGATAAACGATATGAGCTGAACGGAGATGGCAAGAGTTCTGTGACTCTGATCATCTCGAAGCTCTTGCT
>TCONS_00025009
CTGTAGCCAACTCTTACTGCTCTACAAACACTTGACAATGATCAGAAATCAATTTCTGTATTCATATTTGTTCTGCTGGCATTTTGGCTGTTCACTGTTCAGCAGCGTTGAGCAAACTCCCGCTTTACTCATTGTGAGATCCGGAGAGTCCTGCAATATCTCCTGTTCTCACGGTATCACCAGCTACAACACCATACTGTGGTACTACCAGCACGAGGACGGCCAGGGCATGCACAGTATTGGATATTCCTTCCATTCTTCTCACACTCTGGAGAATGTAGAAGATAAACGATATGAGCTGAACGGAGATGGCAAGAGTTCTGTGACTCTGATCATCTCGAAGCTCTTGCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025008 False 283 lncRNA 0.46 2 48607713 48608095
TCONS_00025009 True 351 lncRNA 0.45 2 48607713 48608147

Neighbor

gene id symbol gene type direction distance location
XLOC_012389 FP236356.2 coding downstream 32356 48574770 ~ 48575357 (-)
XLOC_012388 FP236356.1 coding downstream 103384 48486308 ~ 48504329 (-)
XLOC_012387 NA coding downstream 123293 48477295 ~ 48484420 (-)
XLOC_012386 NA coding downstream 210270 48395662 ~ 48397443 (-)
XLOC_012385 CU424460.1 coding downstream 444648 48162951 ~ 48163065 (-)
XLOC_012391 kcnk5a coding upstream 75622 48683769 ~ 48705993 (-)
XLOC_012392 kcnk17 coding upstream 128013 48736160 ~ 48743076 (-)
XLOC_012393 kif6 coding upstream 137593 48745740 ~ 48805159 (-)
XLOC_012394 lgals8b coding upstream 298197 48906344 ~ 48915427 (-)
XLOC_012395 NA coding upstream 308339 48916486 ~ 48918914 (-)
XLOC_012399 CU695076.1 non-coding upstream 619057 49227204 ~ 49227319 (-)
XLOC_012401 gpx2 non-coding upstream 737624 49345771 ~ 49349192 (-)
XLOC_012405 CABZ01003476.2 non-coding upstream 843030 49451177 ~ 49451298 (-)
XLOC_012407 NA non-coding upstream 856162 49464309 ~ 49470669 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location