Fish Transcriptome and Expression Database

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model fish

XLOC_012399 (CU695076.1)

Basic Information

Item	Value
gene id	XLOC_012399
gene name	CU695076.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007128.7
NCBI id	CM002901.2
chromosome length	53461100
location	49227204 ~ 49227319 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024334
tacacagccatatcaccctgcacaCTAACACCGgttgctcactgaagctaagcagggctgtgcccggtcagtacctggattggagaccacatgggaaaactaggttgctgttggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000105888

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00024334	True	116	rRNA	0.53	1	49227204	49227319

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_012397	si:ch1073-80i24.3	coding	downstream	282739	48943204 ~ 48944465 (-)
XLOC_012396	gnmt	coding	downstream	291081	48920799 ~ 48936123 (-)
XLOC_012395	NA	coding	downstream	308290	48916486 ~ 48918914 (-)
XLOC_012394	lgals8b	coding	downstream	311777	48906344 ~ 48915427 (-)
XLOC_012393	kif6	coding	downstream	422045	48745740 ~ 48805159 (-)
XLOC_012400	orc3	coding	upstream	86185	49313504 ~ 49339681 (-)
XLOC_012401	gpx2	coding	upstream	118452	49345771 ~ 49349192 (-)
XLOC_012402	mthfd1b	coding	upstream	127024	49354343 ~ 49412313 (-)
XLOC_012403	znf292a	coding	upstream	188035	49415354 ~ 49438873 (-)
XLOC_012404	cga	coding	upstream	211900	49439219 ~ 49443399 (-)
XLOC_012390	NA	non-coding	downstream	619057	48607713 ~ 48608147 (-)
XLOC_012389	FP236356.2	non-coding	downstream	651847	48574770 ~ 48575357 (-)
XLOC_012388	FP236356.1	non-coding	downstream	722875	48486308 ~ 48504329 (-)
XLOC_012387	NA	non-coding	downstream	742784	48477295 ~ 48484420 (-)
XLOC_012405	CABZ01003476.2	non-coding	upstream	223858	49451177 ~ 49451298 (-)
XLOC_012407	NA	non-coding	upstream	236990	49464309 ~ 49470669 (-)
XLOC_012410	CU929037.3	non-coding	upstream	360316	49587635 ~ 49594737 (-)
XLOC_012419	NA	non-coding	upstream	824852	50052171 ~ 50063437 (-)

Expression

Co-expression Network