XLOC_012400 (orc3)


Basic Information

Item Value
gene id XLOC_012400
gene name orc3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 49313504 ~ 49339681 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024335
AAAGAAGAAGACGAAAAAGCGGTAACTGAAACGCATGGTTTACTGAAAGTTTGtcaaattatatgtttttttaagaaaagaaatgaaCGAAACACTCACGACTTCATCAGTGTCAAAGggatgttttgtttttaagtcaGCCTCTAAAAAGAGAAAGCGACATGTAGGTCTTGACGAATATTTAGTGGAGGCTGACGACGACAGCGGCAGGGATCGATTTAGGATCTGCCAGAAGTTATGGGAGACGGTTCAGACAAGCACTGAGGAAATACaaaatcagctgaataaaaaggTGCTCGACAGTCTTGTTGAGTTCATTAAAAAGCACGAGCTGGGCTCCTCATCTGATGTCTGGAGGCAGAGAACAAGTGAAATCCCCACAGCTGCCCTAATGCTAGGGGTAAATGTTCCAGATCATGCCATGACATTTCGCAGTCTGTGTAATCTCCTTCAGGATTCGGTCACTCCATTTGTGGTATCTGTTCATGCCAAGGAATGTGCAGCTGTGAAGCACTTGATTCAGAAGGTTCTAGAGCAGCTGATGGGAAAAGCAGTGTCAGTGGATGAAGAACAGGAGGAGGATGCAGCTTTGCCTCAAAAGGCTCAGTGTACCATTAGTGCTCTGTGTCAGTGGTATAAGACTGCTACCAAGAAAtgctctcagaaaaaaaatgacaatggcTTGCGTCAGAGTTTGCCTGTTGTTGTGATCTTCAAAGACTTTGAGGCGTTCAACTCACAAGTCTTACAGGATTTTATCCACATCTGCAGCCGATATATCCAGGAGCTTCCGTTCATCTTTGTTTTCGGCATTGCCACATCTCCCAGTGCCATTCAGCACAGGCTTCCCCACTCTGTGTCATCTCTGCTCTGCATTGAGGTCTTTCAGTCTGTCTCCTGCACTCAGCATTTAGCCTCTGTTTTTGACAAGTTAATTCTGAACGCTCACTTCCCATTCAAGCTCAGCAGTAGGGTCATACAGGTGCTGGTTGGCATCTTTCTCTATCATGACTTTTCGGTCCAAAATTTTGTTAAAGGCCTACAGTTCTCCATGTTAGAGCACTTTAATAGTCAGCCTCTCAGTGTGCTTTGCTGTCGGAAGCGAGAGGCGTTGTTGTGTGCCAAGACATTGAGCCAACAAAATGTGGAAAGGATCCGACACCTACCCTCATTCATGAgGTATGTGGAGACACAGGAGCCCGAGGAGCAGGTGAAGCTTCTTACTAGTGACCAACATGTCAagGAAGTCTGCCAAACATTATTGAAGAGCTTGCACAAATACCATAAGAATTACTTTCCCATTCTTCAGTGTCTGCACTCTTTGACTTCTTCACTGCCCAAGTTTCCTCTGGGGAAGCACATACGAGAGCTCCATGTGTCCTGCAATGAGAAGAATTTGTGGGAGACAGAGGAGTATGATTCAGCCATGCAGCTTCTCAGgATTCTAGCAAAAAATGAGCTCGTTGCAGCTTTACAAGGCTGTTCTGACATTCTTCAATCAGCCAGCACCAAGAGAATGCAGACTGTCTTTCAACAGGTGGAAGACTTTATTAACAGATTAGAAACACTGGAAAGTGTCTCTTCAGAAGATTCCTCTGTGAACGGTGCCATCTCAGGAAAAATTGATTATCAGAGAAAAACGGATCTCTTTCAGCTTCAAAAGACACTGCTCGAAAAAGAATCTCGCAGAACAAAGAAAATGAGTCCATTCGAAGTGCTCAGAAGCCAGGTGATCGAGTTTATTGACAGCCTTGTAAGAGAATACCTGACTCCAGCACATCTGCAGCCGCTCAGTGAAGTGTGTTACTTCAGCTCCTCTGGGATCCTGCGACAGCGGCTCAATGTCACTCCTCGCACATCCATTCAAGCTGCTCTCAGTCATCCATACTACTACCTGCAGAATGAAAGTCTGAAAACTAATGCTGGCACAATCTCCAGCGCTGCTCCAGACCTCTGCATTGTATACAAGCTTCATCTTGAGTGTGGGAGACTCATAAATCTCTATGATTGGCTTGAGGCATTTGTAACTGTGCTGTCTGCCGCTGAGGACCAAGATGCTGATTCTGGGGATCATGGACAGCTTGATAGCCTTAAACATGCTCGGTTCATTCAGGCCGTGTCTGAGATGGAATTTCTTGGTTTTGTTAAATCAACAAAACAGAAAACGGACCATGTGGCAAGACTGACATGGGGAGGATGTTGAAGAAAACTCCCTGAACACAACAGACTGGCCTGACATTCATAAATCAGGTCAATGGTATTTTGTACTGTGAGCTTTATTgcaattaaacttttaaaaattcaTGTTGTACTTGTAAAAATgccattgaaataaaaaaaaattattctgtttgaa
>TCONS_00024336
TTGAGGTCTTTCAGTCTGTCTCCTGCACTCAGCATTTAGCCTCTGTTTTTGACAAGTTAATTCTGAACGCTCACTTCCCATTCAAGCTCAGCAGTAGGGTCATACAGGTGCTGGTTGGCATCTTTCTCTATCATGACTTTTCGGTCCAAAATTTTGTTAAAGGCCTACAGTTCTCCATGTTAGAGCACTTTAATAGTCAGCCTCTCAGTGTGCTTTGCTGTCGGAAGCGAGAGGCGTTGTTGTGTGCCAAGACATTGAGCCAACAAAATGTGGAAAGGATCCGACACCTACCCTCATTCATGAgGTATGTGGAGACACAGGAGCCCGAGGAGCAGGTGAAGCTTCTTACTAGTGACCAACATGTCAagGAAGTCTGCCAAACATTATTGAAGAGCTTGCACAAATACCATAAGAATTACTTTCCCATTCTTCAGTGTCTGCACTCTTTGACTTCTTCACTGCCCAAGTTTCCTCTGGGGAAGCACGTAAGTTGACCTTTTGGTGATATTCGGCTTTACAGTGTTGTTTTTATAGTTAACAGTAC
>TCONS_00024337
TTACAAAGAAGAAGACGAAAAAGCGGTAACTGAAACGCATGGTTTACTGAAAGTTTGtcaaattatatgtttttttaagaaaagaaatgaaCGAAACACTCACGACTTCATCAGTGTCAAAGGTAAATGAGCGCTGTCTGCAATAAATGCATGATAACTTATTAAACTTGACACGCGTCCAGACTTACAGATCGTTATATGTATTTCagggatgttttgtttttaagtcaGCCTCTAAAAAGAGAAAGCGACATGTAGGTCTTGACGAATATTTAGTGGAGGCTGACGACGACAGCGGCAGGGATCGATTTAGGATCTGCCAGAAGTTATGGGAGACGGTTCAGACAAGCACTGAGGAAATACaaaatcagctgaataaaaaggTGCTCGACAGTCTTGTTGAGTTCATTAAAAAGCACGAGCTGGGCTCCTCATCTGATG

Function

symbol description
orc3 Predicted to enable DNA replication origin binding activity. Predicted to be involved in DNA replication initiation and pre-replicative complex assembly involved in nuclear cell cycle DNA replication. Predicted to act upstream of or within DNA replication. Predicted to be located in nucleus. Predicted to be part of DNA replication preinitiation complex; nuclear origin of replication recognition complex; and nuclear pre-replicative complex. Orthologous to human ORC3 (origin recognition complex subunit 3).

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0006267 pre-replicative complex assembly involved in nuclear cell cycle DNA replication biological_process
GO:0006270 DNA replication initiation biological_process
GO:0031261 DNA replication preinitiation complex cellular_component
GO:0005656 nuclear pre-replicative complex cellular_component
GO:0005664 nuclear origin of replication recognition complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0003688 DNA replication origin binding molecular_function

KEGG:

id description
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast
ko03032 DNA replication proteins
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-030131-6247 Predicted to enable DNA replication origin binding activity. Predicted to be involved in DNA replication initiation and pre-replicative complex assembly involved in nuclear cell cycle DNA replication. Predicted to act upstream of or within DNA replication. Predicted to be located in nucleus. Predicted to be part of DNA replication preinitiation complex; nuclear origin of replication recognition complex; and nuclear pre-replicative complex. Orthologous to human ORC3 (origin recognition complex subunit 3).

Ensembl:

ensembl_id ENSDARG00000008805

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024335 False 2356 mRNA 0.44 20 49313504 49339677
TCONS_00024336 False 544 lncRNA 0.44 5 49327244 49329761
TCONS_00024337 True 441 lncRNA 0.40 3 49337064 49339681

Neighbor

gene id symbol gene type direction distance location
XLOC_012398 tfb1m coding downstream 33076 49220126 ~ 49280428 (-)
XLOC_012399 CU695076.1 coding downstream 86185 49227204 ~ 49227319 (-)
XLOC_012397 si:ch1073-80i24.3 coding downstream 369039 48943204 ~ 48944465 (-)
XLOC_012396 gnmt coding downstream 377381 48920799 ~ 48936123 (-)
XLOC_012395 NA coding downstream 394590 48916486 ~ 48918914 (-)
XLOC_012401 gpx2 coding upstream 6090 49345771 ~ 49349192 (-)
XLOC_012402 mthfd1b coding upstream 14662 49354343 ~ 49412313 (-)
XLOC_012403 znf292a coding upstream 75673 49415354 ~ 49438873 (-)
XLOC_012404 cga coding upstream 99538 49439219 ~ 49443399 (-)
XLOC_012405 CABZ01003476.2 coding upstream 111496 49451177 ~ 49451298 (-)
XLOC_012390 NA non-coding downstream 705357 48607713 ~ 48608147 (-)
XLOC_012389 FP236356.2 non-coding downstream 738147 48574770 ~ 48575357 (-)
XLOC_012388 FP236356.1 non-coding downstream 809175 48486308 ~ 48504329 (-)
XLOC_012407 NA non-coding upstream 124628 49464309 ~ 49470669 (-)
XLOC_012410 CU929037.3 non-coding upstream 247954 49587635 ~ 49594737 (-)
XLOC_012419 NA non-coding upstream 712490 50052171 ~ 50063437 (-)

Expression


Co-expression Network