XLOC_012404 (cga)


Basic Information

Item Value
gene id XLOC_012404
gene name cga
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 49439219 ~ 49443399 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024344
TCACGCTCCGCCGGAAGTCGAGAACAAAGCCATCATGTTTTGGACAAGATACGCTGAAGCAAGCATTTTCTTGTTGTTAATGATTCTTCATGTCGGACAACTGTATTCAAGAAACGATGTGTCTAACTATGGATGTGAAGAGTGCAAACTCAAGATGAACGAACGTTTCTCCAAACCCGGGGCTCCGGTCTATCAGTGCGTGGGCTGCTGCTTTTCGAGAGCTTACCCCACACCCCTGAGGTCCAAGAAAACCATGCTTGTCCCAAAAAACATCACATCAGAAGCCACTTGCTGTGTAGCAAAAGAATCTAAAATGGTTGCCACGAATATCCCACTATACAACCACACAGACTGCCACTGCAGCACCTGTTACTATCATAAGTCTTAAAACACACTCTCTTCACATTTCTCAAATGCTCATTTCCTGTTCTTAAATCACAGTGACTCATGAAATATGATTTTTATGTAGCTTTCCATATTTCAACTGTGGCCATTTCCAATTCGTTTCTAAAATGGTTGGCATAATTATTGTAAACTGCATATTCTGTCACTTTCATAGaccttaaagggattgttcacctaaaaattaagaTTCAagtgggtgtccaaactcagtcctggaggtctgatgtcctgcagattttagctccaacttgcctcaacacacctgcaaggatgtttctagaaagtctagTAAAGCTGCGGtgacattagagtttgagcatgcgatattttgtcgtgcggcgctgcgaaaagaggCGGGATTTAACAAgcttattatacattttaaaaagtaagcaattactccatattttaaattcctgtccagagaggtcatgttttgatactcgattggtctcacgcagtcaagtgatgcgatttctcaggtcagagttcaccaagcttgaactttgcaccgcagcaacctgcaaaacttgacgcacaACCTTGCgcttccggtctgacgcattcacgtgcgtatgaatggaagtctatggggagaaaagtcaagtgtgaccacagcttaagagcttgattagctagcccaggtgtgtctggttgcgattggaactaaactttgcaggacaccggccctccaggactaagtttggacacccctgctctaaaccttTCCTTGCTGAAAAttccagcttaaatcagcctaggatggttggctggttttagaggggttttaggcactaccagactggtttccagtcatttccagcctggtctttgctggtcaggctggaaagtgaccagctaaaaccatctaaaaccagcttgaccatcctggtttaagctggacatagctgattTAGGCTGGGCTCCCAggctggctaggctggtcaagcatCTCCCAGCTTGTCCAGCTAACAcctggctggaaatggctggaaaccagcctggaagtggccaaaacccctgtaaaatcaggctggtcgaccagctaaaaccagtcaatcatcctagactggtttaagctggatttttcagcagggttatgagtttctttcttcagttgaatgaacaattttaaagaaagctggaaacaccACTAAAACTGAAGTCagtggtttccagctttcttcaaagagGAAAGAAAGTTGAACAGATTTGaatggaacaagtaaagggtgagtaaataatgacagaattgtaattttgggtgaactatccctttaagagcgtAATATGCCATCCTTTACTATCATTAAATCGCTTATTTATTTTGTTGCCTTTACTGTGACATTCTTCAAatctataaatgaaataaaagattGCTGAAGACA
>TCONS_00024345
GCCATCATGTTTTGGACAAGATACGCTGAAGCAAGCATTTTCTTGTTGTTAATGATTCTTCATGTCGGACAACTGTATTCAAGAAACGATGTGTCTAACTATGGATGTGAAGAGTGCAAACTCAAGATGAACGAACGTTTCTCCAAACCCGGGGCTCCGGTCTATCAGTGCGTGGGCTGCTGCTTTTCGAGAGCTTACCCCACACCCCTGAGGTCCAAGAAAACCATGCTTGTCCCAAAAAACATCACATCAGAAGCCACTTGCTGTGTAGCAAAAGAATCTAAAATGGTTGCCACGAATATCCCACTATACAACCACACAGACTGCCACTGCAGCACCTGTTACTATCATAAGTCTTAAAACACACTCTCTTCACATTTCTCAAATGCTCATTTCCTGTTCTTAAATCACAGTGACTCATGAAATATGATTTTTATGTAGCTTTCCATATTTCAACTGTGGCCATTTCCAATTCGTTTCTAAAATGGTTGGCATAATTATTGTAAACTGCATATTCTGTCACTTTCATAGaccttaaagggattgttcacctaaaaattaagaTTCAagtgggtgtccaaactcagtcctggaggtctgatgtcctgcagattttagctccaacttgcctcaacacacctgcaaggatgtttctagaaagtctagTAAAGCTGCGGtgacattagagtttgagcatgcgatattttgtcgtgcggcgctgcgaaaagaggCGGGATTTAACAAgcttattatacattttaaaaagtaagcaattactccatattttaaattcctgtccagagaggtcatgttttgatactcgattggtctcacgcagtcaagtgatgcgatttctcaggtcagagttcaccaagcttgaactttgcaccgcagcaacctgcaaaacttgacgcacaACCTTGCgcttccggtctgacgcattcacgtgcgtatgaatggaagtctatggggagaaaagtcaagtgtgaccacagcttaagagcttgattagctagcccaggtgtgtctggttgcgattggaactaaactttgcaggacaccggccctccaggactaagtttggacacccctgctctaaaccttTCCTTGCTGAAAAttccagcttaaatcagcctaggatggttggctggttttagaggggttttaggcactaccagactggtttccagtcatttccagcctggtctttgctggtcaggctggaaagtgaccagctaaaaccatctaaaaccagcttgaccatcctggtttaagctggacatagctgattTAGGCTGGGCTCCCAggctggctaggctggtcaagcatCTCCCAGCTTGTCCAGCTAACAcctggctggaaatggctggaaaccagcctggaagtggccaaaacccctgtaaaatcaggctggtcgaccagctaaaaccagtcaatcatcctagactggtttaagctggatttttcagcagggttatgagtttctttcttcagttgaatgaacaattttaaagaaagctggaaacaccACTAAAACTGAAGTCagtggtttccagctttcttcaaagagGAAAGAAAGTTGAACAGATTTGaatggaacaagtaaagggtgagtaaataatgacagaattgtaattttgggtgaactatccctttaagagcgtAATATGCCATCCTTTACTATCATTAAATCGCTTATTTATTTTGTTGCCTTTACTGTGACATTCTTCAAatctataaatgaaataaaagattGCTGAAG

Function

symbol description
cga Predicted to enable follicle-stimulating hormone activity. Predicted to be involved in positive regulation of steroid biosynthetic process and thyroid hormone generation. Predicted to be located in extracellular region. Predicted to be part of follicle-stimulating hormone complex. Predicted to be active in extracellular space. Is expressed in several structures, including adenohypophyseal placode; female organism; hypophysis; kidney; and male organism. Orthologous to human CGA (glycoprotein hormones, alpha polypeptide).

GO:

id name namespace
GO:0010893 positive regulation of steroid biosynthetic process biological_process
GO:0006590 thyroid hormone generation biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0016914 follicle-stimulating hormone complex cellular_component
GO:0005179 hormone activity molecular_function
GO:0016913 follicle-stimulating hormone activity molecular_function

KEGG:

id description
ko04024 cAMP signaling pathway
ko04080 Neuroactive ligand-receptor interaction
ko04923 Regulation of lipolysis in adipocytes
ko04929 GnRH secretion
ko04912 GnRH signaling pathway
ko04913 Ovarian steroidogenesis
ko04917 Prolactin signaling pathway
ko04918 Thyroid hormone synthesis
ko05320 Autoimmune thyroid disease

ZFIN:

id description
ZDB-GENE-040715-2 Predicted to enable follicle-stimulating hormone activity. Predicted to be involved in positive regulation of steroid biosynthetic process and thyroid hormone generation. Predicted to be located in extracellular region. Predicted to be part of follicle-stimulating hormone complex. Predicted to be active in extracellular space. Is expressed in several structures, including adenohypophyseal placode; female organism; hypophysis; kidney; and male organism. Orthologous to human CGA (glycoprotein hormones, alpha polypeptide).

Ensembl:

ensembl_id ENSDARG00000040479

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024344 False 1793 mRNA 0.43 4 49439219 49443399
TCONS_00024345 True 1762 mRNA 0.43 3 49439222 49443247

Neighbor

gene id symbol gene type direction distance location
XLOC_012403 znf292a coding downstream 346 49415354 ~ 49438873 (-)
XLOC_012402 mthfd1b coding downstream 26906 49354343 ~ 49412313 (-)
XLOC_012401 gpx2 coding downstream 90027 49345771 ~ 49349192 (-)
XLOC_012400 orc3 coding downstream 99538 49313504 ~ 49339681 (-)
XLOC_012398 tfb1m coding downstream 158791 49220126 ~ 49280428 (-)
XLOC_012405 CABZ01003476.2 coding upstream 7778 49451177 ~ 49451298 (-)
XLOC_012406 fcf1 coding upstream 13759 49457158 ~ 49481672 (-)
XLOC_012407 NA coding upstream 20910 49464309 ~ 49470669 (-)
XLOC_012408 zmp:0000001267 coding upstream 85798 49529197 ~ 49543048 (-)
XLOC_012409 CU929037.1 coding upstream 123062 49566461 ~ 49581414 (-)
XLOC_012399 CU695076.1 non-coding downstream 211900 49227204 ~ 49227319 (-)
XLOC_012395 NA non-coding downstream 520305 48916486 ~ 48918914 (-)
XLOC_012390 NA non-coding downstream 831072 48607713 ~ 48608147 (-)
XLOC_012389 FP236356.2 non-coding downstream 863862 48574770 ~ 48575357 (-)
XLOC_012410 CU929037.3 non-coding upstream 144236 49587635 ~ 49594737 (-)
XLOC_012419 NA non-coding upstream 608772 50052171 ~ 50063437 (-)
XLOC_012432 NA non-coding upstream 1532384 50975783 ~ 50984690 (-)

Expression


Co-expression Network