XLOC_012406 (fcf1)


Basic Information

Item Value
gene id XLOC_012406
gene name fcf1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 49457158 ~ 49481672 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024347
TTTTATGTCGCAAAGCGCAACACACGAGGGCTACAGTGATAATCTCGAACAAATTCAGCCGTCATGGGAAAACAGAAGAAACAGAAAAAATATGCGACCATGAAAAGAATGATCAGTCTGAAGGACCAGAGGATaaaagaaaaagacagagcAAAAacgcagaagaagaagaaagaagatCCCTCGGCCATTAAAGAACAAGAAATAGCAAAGTACCCCTCTTGTCTCTTCTTTCAATACAACACCCAGCTTGGACCTCCGTATTACATCCTGGTTGATACCAACTTCATCAACTTCTCTATTAAGGCCAAATTAGATGTTGTCCAGTCGATGATGGACTGCCTCTATGCTAAATgTGTTCCTTGCATAACAGACTGTGTGATGGCTGAGCTGGAGAAATTAGGCATGAAGTATCGAGTGGCTTTGCGGATTGCCAAAGATCCTCGATTCGATCGATTGCCTTGTTCACACAAAGGAACATATGCGGATGACTGCTTGGTGCAGAGAGTAACACAGCACAAGTGTTATATTGTGGCCACGGTGGACAGAGACCTGAAAAGGAGGATTCGGAAGATCCCAGGAGTCCCCATCATGTACATCTCCAACCACAGGTATAACATTGAGAGAATGCCGGACGATTATGGAGCACCTCGGTTTTAGtacgcagattttttttttttttttggtaataaaaAGATTTACCTGTGAAATGTATTCAGTGCTCCACAATAAAGACTTTGGCTGGCCGGATGCTTGGCGGCACATATCTTCAATTGATATTAAAATGTGTGAGAAGAATCGAGAAAACCAATAACAGAGTTGAACCCAAAGGCACACCATGTGGATGATATTGTGGCAAAGAATTCAGGTCATCGACTTGTTTATAATGTACTTGTTTGAACCATTTGGTTGCCTGCCAGCTATATTGTTATCAGACAAAAGAGATTTGCTTTGTGCTACTTCAAGCTTGAGACACAGCAAACTGACATTAAAGAACTCGCATCGATCAAAACCAGCTgtgtctggaccaaaaagctgtgtgtgaacACAAATGTATGACAttcaactgaaaataaaatgtacatgttGCACCTGC

Function

symbol description
fcf1 Predicted to act upstream of or within rRNA processing. Predicted to be part of small-subunit processome. Orthologous to human FCF1 (FCF1 rRNA-processing protein).

GO:

id name namespace
GO:0032040 small-subunit processome cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-050417-67 Predicted to act upstream of or within rRNA processing. Predicted to be part of small-subunit processome. Orthologous to human FCF1 (FCF1 rRNA-processing protein).

Ensembl:

ensembl_id ENSDARG00000102333

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024347 True 1096 mRNA 0.42 8 49457158 49481672

Neighbor

gene id symbol gene type direction distance location
XLOC_012405 CABZ01003476.2 coding downstream 5860 49451177 ~ 49451298 (-)
XLOC_012404 cga coding downstream 13759 49439219 ~ 49443399 (-)
XLOC_012403 znf292a coding downstream 18285 49415354 ~ 49438873 (-)
XLOC_012402 mthfd1b coding downstream 44845 49354343 ~ 49412313 (-)
XLOC_012401 gpx2 coding downstream 107966 49345771 ~ 49349192 (-)
XLOC_012408 zmp:0000001267 coding upstream 47525 49529197 ~ 49543048 (-)
XLOC_012409 CU929037.1 coding upstream 84789 49566461 ~ 49581414 (-)
XLOC_012410 CU929037.3 coding upstream 105963 49587635 ~ 49594737 (-)
XLOC_012411 zgc:171599 coding upstream 150172 49631844 ~ 49637023 (-)
XLOC_012412 col12a1a coding upstream 303823 49785495 ~ 49978986 (-)
XLOC_012399 CU695076.1 non-coding downstream 229839 49227204 ~ 49227319 (-)
XLOC_012395 NA non-coding downstream 538244 48916486 ~ 48918914 (-)
XLOC_012390 NA non-coding downstream 849011 48607713 ~ 48608147 (-)
XLOC_012419 NA non-coding upstream 570499 50052171 ~ 50063437 (-)
XLOC_012432 NA non-coding upstream 1494111 50975783 ~ 50984690 (-)
XLOC_012433 NA non-coding upstream 1518180 50999852 ~ 51004995 (-)
XLOC_012434 NA non-coding upstream 1533439 51015111 ~ 51018821 (-)

Expression


Co-expression Network