Gene
RNA
| Item | Value |
|---|---|
| gene id | G404486 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000299 |
| NCBI id | null |
| chromosome length | 6567443 |
| location | 1199357 ~ 1200671 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU464918 | True | 302 | lncRNA | 0.45 | 2 | 1199357 | 1200671 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000299_01114487_01122666 | NA | coding | downstream | 75127 | 1113750 ~ 1124230 (-) |
| CI01000299_01057889_01063623 | NA | coding | downstream | 135734 | 1057820 ~ 1063623 (-) |
| CI01000299_01003547_01034507 | NA | coding | downstream | 164545 | 1003319 ~ 1034812 (-) |
| CI01000299_00670925_00672195 | NA | coding | downstream | 525732 | 670680 ~ 673625 (-) |
| CI01000299_00452374_00452868 | NA | coding | downstream | 746489 | 451341 ~ 452868 (-) |
| CI01000299_01222994_01268707 | NA | coding | upstream | 22188 | 1222859 ~ 1270326 (-) |
| CI01000299_01338052_01368900 | NA | coding | upstream | 137201 | 1337872 ~ 1369376 (-) |
| CI01000299_01419938_01421048 | NA | coding | upstream | 218858 | 1419529 ~ 1421048 (-) |
| CI01000299_01693958_01696561 | SLITRK5 | coding | upstream | 492253 | 1692924 ~ 1697305 (-) |
| CI01000299_02670695_02682116 | NA | coding | upstream | 1469925 | 2670596 ~ 2682116 (-) |
| G404484 | NA | non-coding | downstream | 1116 | 1197441 ~ 1198241 (-) |
| G404457 | NA | non-coding | downstream | 51630 | 1147456 ~ 1147727 (-) |
| G404380 | NA | non-coding | downstream | 68095 | 1131043 ~ 1131262 (-) |
| G404293 | NA | non-coding | downstream | 71924 | 1125736 ~ 1127433 (-) |
| G404493 | NA | non-coding | upstream | 11036 | 1211707 ~ 1211930 (-) |
| G404541 | NA | non-coding | upstream | 108883 | 1309554 ~ 1309772 (-) |
| G404604 | NA | non-coding | upstream | 203243 | 1403914 ~ 1404355 (-) |
| G404669 | NA | non-coding | upstream | 266170 | 1466841 ~ 1500623 (-) |
| G404771 | NA | non-coding | upstream | 403629 | 1604300 ~ 1604628 (-) |
| G404372 | NA | other | downstream | 123466 | 1070607 ~ 1075891 (-) |
| G404784 | NA | other | upstream | 458984 | 1659655 ~ 1660000 (-) |
| G404976 | NA | other | upstream | 654968 | 1855639 ~ 1880988 (-) |
| G405053 | NA | other | upstream | 817016 | 2017687 ~ 2018050 (-) |
| G407413 | NA | other | upstream | 3275323 | 4475994 ~ 4550721 (-) |
