CI01000300_05743542_05743913


Basic Information

Item Value
gene id CI01000300_05743542_05743913
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 5743493 ~ 5744304 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000300_05743542_05743913.mRNA
ACTCTGTTGCTCGCGAATGATGGCGCTGTCTCACTGCTGTGCCAGAGCGCGAGCGATCCACGAGGCTGTGCGCTCTATACCTCAATCTGTGCAACTCACTTTATAATGCTTACATCGAGTTGCGTGTGTCCACTGCCTCTGCATGACTATTTATTAATATGCATAAGACATAATATTAATAACTATTATATTTATTGCGGGTTAAGTAGCGCGCGTAAACGAGTAATGGTTGTAGTAATAGTAGCTACTGTTTTGCCTTTTTCTGTAATGCATTTTTTTTTAAAAACAAGTAGTTGCATTTGGCAAAGTTGAAAAGCTATTTTGAAAGAGGCTCACCAGATTCAGCGGGCAATAGCCGCCGCTCCAAAGTTGCGTCTAAATGATCTCCAGGATGTGTTGGCAAAAAGAGTATGTGAGCATATCTTCGCATGGAGATTCAGTCAAAACTCGTAATAAATCCGGGTCGTGGTGTTGTAGCCCCTACATTTCCTTACACATCCGAAATCCTCGTGAGCAGGATTCCACGCAGCCACGCGTGCAGAGACTATCCACAATACTCACTCAGAGCTCGTGCGCTCAGGCAGTGGAGGAGGCGCGCGGATCCTCCGGGATGCCTGGCTGGCTTTCCGCCGCTGTGACGTCACCGCTCTCCCTGGGGAGTCGATCATTTGATTCAGTGATCTCACCTCTACCGTACGCTTTGACGTTTCGCACTGACATTGAAGGCTGTTTATTGAATTATCAGCGTAATGGAACTTTGTAACTTTAGACATCAGCTGTCTGTGGTGATCCATTACATTAGGATCAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000300_05743542_05743913.mRNA True 812 mRNA 0.46 1 5743493 5744304

Neighbor

gene id symbol gene type direction distance location
CI01000300_05490981_05504872 NA coding downstream 238572 5490198 ~ 5504921 (-)
CI01000300_05345787_05353985 FRG1 coding downstream 389508 5345710 ~ 5353985 (-)
CI01000300_05338723_05344483 ASAH1B, ASAH1 coding downstream 399010 5338323 ~ 5344483 (-)
CI01000300_05227185_05241315 MTMR7B coding downstream 502178 5226753 ~ 5241315 (-)
CI01000300_05170048_05173465 FGF20, FGF20A coding downstream 569709 5169695 ~ 5173784 (-)
CI01000300_05852841_05879101 ACSL1, ACSL1A coding upstream 108537 5852841 ~ 5879101 (-)
CI01000300_05900360_05934284 NA coding upstream 156013 5900317 ~ 5934284 (-)
CI01000300_05940815_05947079 NA coding upstream 196245 5940549 ~ 5947079 (-)
CI01000300_05956128_05961938 UFSP2 coding upstream 211710 5956014 ~ 5961938 (-)
CI01000300_05962858_05963880 NA coding upstream 218530 5962834 ~ 5964126 (-)
G412365 NA non-coding downstream 34587 5708440 ~ 5708906 (-)
G412339 NA non-coding downstream 39577 5703649 ~ 5703916 (-)
G411414 NA non-coding downstream 102005 5641202 ~ 5641488 (-)
G411402 NA non-coding downstream 149269 5593790 ~ 5594224 (-)
G411372 NA non-coding downstream 166513 5576769 ~ 5576980 (-)
G412419 NA non-coding upstream 161545 5905849 ~ 5906092 (-)
G412421 NA non-coding upstream 165120 5909424 ~ 5909624 (-)
G412342 NA non-coding upstream 192349 5936653 ~ 5937296 (-)
G412376 NA non-coding upstream 232515 5976819 ~ 5977214 (-)
G412436 NA non-coding upstream 303933 6048237 ~ 6126873 (-)
G411012 NA other downstream 1348372 4390320 ~ 4395121 (-)
CI01000300_04075307_04079312 NA other downstream 1661391 4074636 ~ 4080539 (-)
G410498 NA other downstream 1935286 3801139 ~ 3808207 (-)
G409775 NA other downstream 2879495 2863158 ~ 2863998 (-)
G409558 NA other downstream 3454520 2287181 ~ 2288973 (-)
G412555 NA other upstream 470616 6214920 ~ 6215579 (-)
G412681 NA other upstream 908694 6652998 ~ 6690333 (-)
G413140 NA other upstream 2402228 8146532 ~ 8146889 (-)
CI01000300_08959695_08973598 UGDH, UGDH.L other upstream 3225144 8958963 ~ 8973750 (-)
G414498 NA other upstream 3913745 9658049 ~ 9713722 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G2720 NA non-coding CM030121.1 CM030121.1 16079399 ~ 16084866 (-)
tiger barb (Puntius tetrazona) G2286 NA non-coding NC_056699.1 CM032068.1 10256650 ~ 10256887 (-)