CI01000300_05852841_05879101 (ACSL1, ACSL1A)


Basic Information

Item Value
gene id CI01000300_05852841_05879101
gene name ACSL1, ACSL1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 5852841 ~ 5879101 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000300_05852841_05879101.mRNA
ATGCAGGCCCAGGATCTGATCCGTCACCTGCGGGTACCTGAGCTGGATGACGTGAGGCAGTATGTGCGCAGTTTACCCACCAACACCCTCATGGGCATGGGTGCATTCGCTGCCATCACCACATACTGGCTGGCCACCCGTCCCAAAGCCCTTAAACCACCCTGTGACCTCGAAATGCAGTCCGTGGAGGTACCGGGTAATGAATATGCTCGTCGGTCTATCCTACTGGACAGTGACACATACATGACATACTACTATAAAGACGCTCGGACAATGTATGAGTTTTTCTTACGAGGACTAAGAGTGTCAAATAATGGTCCCTGTTTGGGTTCACGAAAACAGAGCAAACCATACAAATGGCTGTCGTATAAAGAGGTAGCAGACAGGGCAGAGTTTGCAGGTTCAGCATTACTCCACAGAGGTCACAGTCAATCAGGAGACAAATACGTTGGCATCTTTGCACAGAACAGGCCAGAGTGGACGATTTCAGAGCTGGCATGTTACACATATTCACTGGTGGCAGTGCCGCTGTATGACACACTGGGTACAGAGGCCATCAGCTACATCATTGACAAAGCCTCCCTCTCCACTGTGATCTGTGATCTCGCGGATAAGGCTCATCTGATCTTGGACTGCGTGTCTGGCCGGAAACACAGCGTCACAACCATAGTGATCATGGAAAACTTTGACAGTGAGCTGACTGCAAAAGCACAACAGAACGGCATTGAAGTTATGAGCCTCAGGGAGCTGGAGGCTATCGGCAAAGCCAACCACAAGACACCCATTCCTCCTAAACCAGAGGACCTGGCACTGATTTGCTTCACAAGTGGAACAACAGGAAATCCAAAGGGAGCAATGCTCACACATGGAAACATTGTTTCCAATTGTTCCGCTTTCATTAAAGTTCATTGCATGCTTAACCAGACAGACATTCACATTTCTTACCTTCCACTAGCACACATGTTTGAGAGAGTGGTTGAGGGTGTGCTTCTGGTCCACGGAGCCAGGATTGGATATTTTCAGGGTGATATCCGTCTGCTGATGGATGATTTGAAGACTCTTAAGCCTACTGTATTTCCTGTAGTGCCTAGACTACTCAACCGCATGTTTGATAAGATCTTCGGACAGGCGAACACTCCTCTCAAGAGATGGCTGCTGGATTTTGCCACCAGCAGGAAAGAGGCGGAGCTAAGAAGTGGAGTTGTAAGGAAGGACAGCATGTGGGATAAATTAATCTTCAGCAAAGTGCAGGCCAGTCTGGGTGGGCGCGTGAGGCTTATGATCACAGGAGCTGCTCCCGTCTCTCCCACCGTCCTCACCTTCCTGAGAGCAGCGCTGGGCTGCCAGTTTTATGAGGGTTATGGGCAGACAGAGTGTACCGCAGGCTGTACAATGTCACTTCCTGGAGACTGGTCAGCAGGTCATGTGGGAACGCCGCTGCCCTGTAATTTCGTTAAGTTACTGGATGTGGCTGAAATGAGTTATTTTGCAGCAAATGGAGAGGGAGAGGTGTGTGTGAAAGGAGCAAATGTTTTTCAAGGTTACCTGAAGGACCCAGAGCGAACCTTAGAGGCCATAGATAAAGACGGCTGGCTGCACACTGGAGATATCGGCAAATGGCTACCGAATGGAACTCTGAAGATTGTAGACAGGAAGAAACACATCTTTAAGCTGGCTCAGGGTGAATATATTGCTCCAGAGAAGATTGAGAACATCTACATCCGCAGTGACCCTGTGGCCCAGGTCTTTGTACATGGAGACAGTCTACAGGCATGTTTAGTGGGTATTGTGGTTCCTGATCCAGACTTTCTGCCAGGATGGGCAAAGAAAAGAGGCATTGAGGGCTCCTATAGTGAAATGTGCAAACGCAAGGAACTGAAAAATGCCATCCTAGAGGATATCATTCGGCTAGGGAAAGAAGCCGGACTGAAGTCTTTTGAACAGGTGAGAGACATTGCCCTACACATGGAAATGTTCTCTGTTCAGAATGGACTCCTCACACCAACACTGAAAGCAAAGAGAACCGAGCTGAGAAGCCACTTCAGAGAGCAGATTGACCAGCTCTATGCCAAAATCAAAATG

Function

symbol description
acsl1a Predicted to enable arachidonate-CoA ligase activity. Predicted to be involved in lipid biosynthetic process; long-chain fatty-acyl-CoA biosynthetic process; and very long-chain fatty acid metabolic process. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum and membrane. Is expressed in several structures, including digestive system; eye; gill; heart; and pleuroperitoneal region. Orthologous to human ACSL1 (acyl-CoA synthetase long chain family member 1).
acsl1 Enables long-chain fatty acid-CoA ligase activity. Involved in lipid biosynthetic process; long-chain fatty acid import into cell; and long-chain fatty acid metabolic process. Located in endoplasmic reticulum and mitochondrion. Biomarker of obesity.

GO:

id name namespace
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01897 ACSL, fadD; long-chain acyl-CoA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000300_05852841_05879101.mRNA True 2082 mRNA 0.49 20 5852841 5879101

Neighbor

gene id symbol gene type direction distance location
CI01000300_05743542_05743913 NA coding downstream 108537 5743493 ~ 5744304 (-)
CI01000300_05490981_05504872 NA coding downstream 347920 5490198 ~ 5504921 (-)
CI01000300_05345787_05353985 FRG1 coding downstream 498856 5345710 ~ 5353985 (-)
CI01000300_05338723_05344483 ASAH1B, ASAH1 coding downstream 508358 5338323 ~ 5344483 (-)
CI01000300_05227185_05241315 MTMR7B coding downstream 611526 5226753 ~ 5241315 (-)
CI01000300_05900360_05934284 NA coding upstream 21216 5900317 ~ 5934284 (-)
CI01000300_05940815_05947079 NA coding upstream 61448 5940549 ~ 5947079 (-)
CI01000300_05956128_05961938 UFSP2 coding upstream 76913 5956014 ~ 5961938 (-)
CI01000300_05962858_05963880 NA coding upstream 83733 5962834 ~ 5964126 (-)
CI01000300_05966800_05976695 PDLIM3A, PDLIM3 coding upstream 87011 5966112 ~ 5976695 (-)
G412365 NA non-coding downstream 143935 5708440 ~ 5708906 (-)
G412339 NA non-coding downstream 148925 5703649 ~ 5703916 (-)
G411414 NA non-coding downstream 211353 5641202 ~ 5641488 (-)
G411402 NA non-coding downstream 258617 5593790 ~ 5594224 (-)
G411372 NA non-coding downstream 275861 5576769 ~ 5576980 (-)
G412419 NA non-coding upstream 26748 5905849 ~ 5906092 (-)
G412421 NA non-coding upstream 30323 5909424 ~ 5909624 (-)
G412342 NA non-coding upstream 57552 5936653 ~ 5937296 (-)
G412376 NA non-coding upstream 97718 5976819 ~ 5977214 (-)
G412436 NA non-coding upstream 169136 6048237 ~ 6126873 (-)
G412378 NA other downstream 91652 5711685 ~ 5761189 (-)
G411012 NA other downstream 1457720 4390320 ~ 4395121 (-)
CI01000300_04075307_04079312 NA other downstream 1770739 4074636 ~ 4080539 (-)
G410498 NA other downstream 2044634 3801139 ~ 3808207 (-)
G409775 NA other downstream 2988843 2863158 ~ 2863998 (-)
G412555 NA other upstream 335819 6214920 ~ 6215579 (-)
G412681 NA other upstream 773897 6652998 ~ 6690333 (-)
G413140 NA other upstream 2267431 8146532 ~ 8146889 (-)
CI01000300_08959695_08973598 UGDH, UGDH.L other upstream 3090347 8958963 ~ 8973750 (-)
G414498 NA other upstream 3778948 9658049 ~ 9713722 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location