CI01000300_07973295_07988695 (NCAPD3)


Basic Information

Item Value
gene id CI01000300_07973295_07988695
gene name NCAPD3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 7973295 ~ 7988695 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000300_07973295_07988695.mRNA
ATGAGATCGTCAGTGTATGCCGCCGTGCATGCCGGGATTAATGATGTCCCACCACAGTGGCTGTTGGCGCGTTGTTTTGAACGGAAGATGGAGTTGATACGTGCTGTGCAGTTATTAAAATTGAACAGTGTGTCTACAGCCTGGGTGGATGCAGTGTGGGATTTCGAGTTCACCCACACAGAGCCTCTTGACCCTGTTATTGAGGAGGAGATAAAGGAAGACCCTGATGTTTTCAAAGCAGTTTACACGCAGCTTTTGACCTTCTCCAATGAGGATGAGGACAATACACAGAGTGTCTGGGTGGTGTTTGGTGAGAATGGTGTCTCTGCAAAAACTTTGGTGGCTGTTCTGTCCTACTTCATCCTTAGTGCTAAAGCCAAAAGTCCCAGTCTTGAGCAGAGACTGTGTGGTCTACAAGCAGCCTCTCTGTACTTGTTGCTGCTAAAAATACCAGGTAGTGTTGCGAATAAAGTGTACCATCAGATCCTTTTTGATACCTGTCTGAACATGCCCCTAAAATGCTGGCCTCAAGACTCTGGCAAGAAACGTAAGAAAGATTCTCTGAAAAGCTCCCAAGGTGACCCAAAACCTGGAAAACGATCCAAACCCCCAAAGAAAATGTCAGAAGAGATGGAGATTGATGATGATGAAGATGACGAAGAAGAAGGGATGTACTTTTCTGCACAGGATTTGCTGAAACTAAGGGAGGGCATTGTATTGCTGGTTCGCACACTTCTGAGACTCCTAGAGAAATTTTCTCTTCGAGACAAACCTCAGAGTGCTGACAGTTGTGTTCAGCTTTTCACTGAACTTACCAACTTCGAACCAGTCATTGGAGATCTGTCATTCTCTCAGGAAAGGAATGTCGACCAATTAGAGAGTCTACCTGAGCTGTCCTATCATGGACTGGGGCTACTTTGCTCGACCATTCATGGTGAAGGAGATGAGTGCCGTCGCCGAGTGTTTCGCAAGCTACTGTATGTGATTCTAATGATGAAAACACAGGAGCGGTCCAAGCCATGTCTTCTTGTTCCAACTCAGGCAGTCTGTGGTGCCAGAGACCATGCTATCCTTTTCATTAGTCATATTGTTGATGAACAGAGGGAGGCCACATTGCCACTTTTACGGATCCTTGTGCAACACATCTGCCATCAGATGGTGGAGAAGTCTGAATATCGAGCCAGTGGAGCACAGGCTGTTGGGAAGCTAATGGCTAAGATGCCATGTCAGGACTATGCAGCCATCGTTAAGTGGGTCTATAATTACTCCCGGAATAACAAGAGTGAGAGGGAACTGGATGACACAGTGGACCCTGAGATGGCTGTGTTCCTGTCTCACAAGTTCCTGGTGCACAATATAGTTTACAATCATCGTAATGACATCTCTCCCACAGTCAGAGGTCACGCATTGCACTGCCTGGCACAGTGTCTGGAGCTGGGTTCCCAGAATGCCACAAAATGTGTGCATGAGCTGTTCTCCAATAGTGCTCAGACTATGCTGGATTCGGCCCGTTCTGAGCAAACTCTAAAGAGAAGAGAAACGGGTCAGAAAAGTGCCCTGACCTTCAGAACCATTGAGCTTACAAAACACAAGAGCATCACTACGACCCACAGGAGTGTTATGAATACTTCCTTACAGAATGAGGAAACTCTGGCTCTATTTAAAAAGCATGTCAGTGATCCAAAAACCAATGCTAGAAAAAGTGCACTGGAGACCGTCATGAGTCTGCTGAAGCATGGGGTGATCTCATGCAGTGCGGAGAATCTGACTATTTTGTCGGAGCGCTGCAGGGATCCTGCTGTCTCTGTGAAGAAGAAAGCCATGCAGTGCCTTATGGACCTCCTTGCTGCTCTACCTGATAATAGAGAGGTGCAGGAGTCTTGGCTGAGAGGAGTGTTACCGGCTGTCATGGACTCTGAGAGCTCTGTGCAGGAGAAAGCTCTAGAGTGTCTGGACCATGTCATCATCACTCACATTAAGACTCAAGGCAAATATCGGGATGGCGACACCTCTCAGAGGCTGGCCTGGGATTTACTGGGACTGATGTGTGAGAAGTGTCAAGACCTCAGCCGGTATTTCAGCAAGGCTTTCAGCGTGTGGGCTCCGCAGCAGAAGTTCACTCCTGCCTTTGTGAACAGTTTGCTGTCTCACACAGAGGGAGAGAGGGCTGCTGCTGCCTGGCTGCTGTTAGCTAAAATTGCCAGTTGCTCTCCTAAACTGAACTACGGCACTGTTCTGGATACCTGGGAGAATACAATCAGGTCACCAGTTGTTTCAGTTACAATGACCTGTCATATCTTGAGCGTTATGGGTGACATTGCCTCTAATCTCAATGATGACACCAAGGCCAGAATAGTAGATGATCTGATGGGCTGGTTGAAGACTTTCAGCCTGCCTTTGGAGGTCATCAGCTCCTGTGTTGATACTCTGGTCAGATTTGGAAGATCAGACAACACTCAGGACACATTGAGGTTCTTGGATCGTTTCTGTGGAGAGCTTGTTTCTGTGTGTGAGAGTTATCTGTCTGGTGTCATTCTACAAGAGAAAGGAGCTATGGACATCAATGAAGACCTTCTGGTGAAACATCTTTATACACTTGGTGTCACTTCTCTCCATTGTCCATCTAAAGTGGGGAAGAGAATTTTCCTTCTGGTTCAGTCTGTACTAACTCCTTCAGAGCAGCTAGGTAAGCTGTGTTTGCAGCACGAGGAACTGATGTTGAAGTATCTCCCTGTGTTTGCGCGGGAGCTGGAAGTGGGCACGGAGCTGGCCGTGCGCAGTAATGTGGTGGTGGTGATGTGTGACCTTTGCGTGCGCTACACCAACACAGTGAGCCGGTATATCCCGAACATCTCAGCATGTCTGAGAGACAAAGAGCCCATCGTCCGAGAACAGACCCTCATTATGCTCACCAACTTACTGCAGGAGGAATATGTGAAATGGAAAGGTGCACTGTTTTTCCGCTTCGCTGTGGCTCTTGTGGACCCAGATCCTGCCATTGCGGATCTCTGTGAGTACTGCCTGGTTGACCTTCTGCTAAAGAAGAGTCCACTCATGTTTTCCCAGCATTTCATTGAGTGCATTTTCCACTTCAACTCTTATGAGAAACACAAGAAATATAATAAATTTCCTCAAACTGAGAGTGAGAAAAGCAAGTTTTCTCTGAGAGGACTGCAGAATCAAGGCAAACGCTTCAGGATCTACAGGTTCCTATTGAAGAACTTTACCGATGAGCAACGCTTCAATATCACAAGCAAAATCTGCCAGGATATTCTTGCCAGTTTTGTGGACTCTGAGCTGCCTCTGGACTCTCAGGGCTCAGAGTTGCTTGCAGATACATTTGACATCCTCTCGCTGAAGGAGATGAAACTTACAGCCATTAGCGGCCAAGCAGCAGCAGAAGAACCTCAGGAGGATGAGATGGCCATGGCTAAAGCTGTCTTACAGGTGGCCCAGAAAAAGTTGGTCTCACAGGTCCAAAAGAGAAACTTTGTGGAGAATGTTATTCCTATCATCATCAGTCTGAAGAACATGCTGGAAGAGCAACACTCACCTGTCCTGAAACACCTTATGGCATACCTACAGGTAACCATGCAGGACTATCGTTCAGAGGTGAAGGAGCTGTTTGCTGCTGATGAGCAGTTGGCTGCAGAGAGTAATGCTGTGGCTTCTCCTGCCCAGGCAGCAAATGTTGGGAGGCAGACACCCAGGGGAGGTTTTGCCACACCTCTACATCCTCATGCTAATAAAGGACCCGCACAAACCCCTAAATCTGCTGATGCTCTGAGGCGCCGCACATATGCAGGCATGCTAACTCCAGTCAGGAGCCATTCTTCCCCTACAGTGTTTTCAACAGGACGAGGAAAACAGATTGGGAGAGCCATTAGTACACCACAAGCGAGCATCAATGAAGTGACATTTGGAGAGCAAGTCAGTGCCATCTGCAATGAAACTAGAAGAGGTAGCAAAGGTGTGGAGGAAGAAGAGAGTGTTCTACATCTGATGTCACCAGAGCAACA

Function

symbol description
ncapd3 Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in meiotic chromosome condensation and mitotic chromosome condensation. Predicted to act upstream of or within cell division and chromosome condensation. Predicted to be located in nucleus. Predicted to be active in condensed chromosome, centromeric region. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly. Orthologous to human NCAPD3 (non-SMC condensin II complex subunit D3).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0042393 histone binding molecular_function

KEGG:

id description
K11491 NCAPD3; condensin-2 complex subunit D3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000300_07973295_07988695.mRNA True 4019 mRNA 0.48 33 7973295 7988695

Neighbor

gene id symbol gene type direction distance location
CI01000300_07947621_07971434 WDR19 coding downstream 1861 7947461 ~ 7971434 (-)
CI01000300_07914090_07942773 GLRBA coding downstream 30522 7913771 ~ 7942773 (-)
CI01000300_07859787_07907302 GRIA2A, GRIA2, GRIA2B, GLUR2A coding downstream 65993 7859787 ~ 7907302 (-)
CI01000300_07846182_07849825 NA coding downstream 120904 7845868 ~ 7852391 (-)
CI01000300_07814364_07828806 NPY1R coding downstream 144211 7813329 ~ 7829084 (-)
CI01000300_07997208_08015430 NA coding upstream 8276 7996971 ~ 8015430 (-)
CI01000300_08025108_08078731 NA coding upstream 36413 8025108 ~ 8078731 (-)
CI01000300_08161278_08172437 MELK coding upstream 172188 8160883 ~ 8172437 (-)
CI01000300_08176734_08193751 FRMPD1 coding upstream 187963 8176658 ~ 8193751 (-)
CI01000300_08323302_08335456 CHRNA8 coding upstream 334549 8323244 ~ 8335456 (-)
G413093 NA non-coding downstream 89499 7881504 ~ 7883796 (-)
G413072 NA non-coding downstream 165462 7807617 ~ 7807833 (-)
G413041 NA non-coding downstream 361484 7611480 ~ 7611811 (-)
G413019 NA non-coding downstream 392726 7580352 ~ 7580569 (-)
G412963 NA non-coding downstream 435690 7513956 ~ 7537605 (-)
G413127 NA non-coding upstream 105975 8094670 ~ 8099659 (-)
G413134 NA non-coding upstream 148995 8137690 ~ 8143059 (-)
G413142 NA non-coding upstream 163869 8152564 ~ 8152795 (-)
G413143 NA non-coding upstream 167781 8156476 ~ 8156780 (-)
G413165 NA non-coding upstream 253955 8242650 ~ 8243097 (-)
G412681 NA other downstream 1282962 6652998 ~ 6690333 (-)
G412555 NA other downstream 1757716 6214920 ~ 6215579 (-)
G412378 NA other downstream 2212106 5711685 ~ 5761189 (-)
G411012 NA other downstream 3578174 4390320 ~ 4395121 (-)
CI01000300_04075307_04079312 NA other downstream 3891193 4074636 ~ 4080539 (-)
G413140 NA other upstream 157837 8146532 ~ 8146889 (-)
CI01000300_08959695_08973598 UGDH, UGDH.L other upstream 980753 8958963 ~ 8973750 (-)
G414498 NA other upstream 1669354 9658049 ~ 9713722 (-)
CI01000300_10698449_10700497 NA other upstream 2707316 10696011 ~ 10701375 (-)
G414829 NA other upstream 2717305 10706000 ~ 10706323 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location