CI01000300_08599231_08604382 (ZMYND10)


Basic Information

Item Value
gene id CI01000300_08599231_08604382
gene name ZMYND10
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 8599231 ~ 8604927 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000300_08599231_08604382.mRNA
ATGGATTCAGTACTTCTACACGGAGAAGCTGAAGGATATATTCAAAGTCTGGAGAATATGTCACTTCGTGATATCGGAAGCCCAAGGTGGTTTCGCCAACATGAATTCATTGAGAAGCTGAATATGCAAGCTATTCTGAATGCCAGTTCCAATCAGGAGGAATTCATAAAAGACCTCTTTGTTTCTCTTGGAAAGATACCCACACTGATACATGCAATGATACTTACAGAAGTCTGGAAACATAAAGTGTTACCCATAATTTGCAAACTCCAGGACTTTAATCCAAAAAGCACATTTCTACTCTATATGGTGATTCACCATGAAGCCACCATTATAAACCTGCTGGAGACAATTATGTACCACAAAGAGTCCAGTGAAGCTGCTGGTGATAGTGTGCTTGATTTAGTCGATTACTGTCATCGCAAACTCACACTGCTGGCAGGACGTTCTGTCTCTGGAGAGATCCCAACTGAGGACCGAATTACACACACAGAGCTGTCAGACACGGCGTCTGTGCAGGATCTGCAAAGACAAAGTGACATGTTAGAGTTTGAAATCTCTATCAAGGCTCTGTCAGTACTGTGCTACATCACTGATCACATTGAGAGTTTGAGTTTGAGTGTGCTGTCGAGGATGCTGTGCACTCATAATATGCCCTGTGTGCTGGTACAGTTGGTGGAACATTGCCCCTGGAACAGAGGTACACTGGAGAAATACACAGAGGGGAAATGGAGGCCCGTCCTGCCTGAAGATCAGCTAAAGTTAAATAAACATGATGGCCAGGTGTGGATGGCTTTACTGAACCTGATGCTCAAACCAGACTGCCAAAGAAAATATGATTTCAATAGCTTTAACAAAGCACAACTTTTAAAGCTTTGTGGGTTTTTGACAGAGGTTGTGATAGATCAGTTACCAAATCTACTTGATCTCAAGCAGTTCCTCAGTCAGCTTGCTCTCACAGATCCAGTGGCCCCTAAAAAAGATCTAATCTTGGAACAGGTGCCAGAGATATGGAATAATATTGTGATGGAGAACAGCAACAAGTGGAAAGCCATAGCCAAATTCCAAGTGACGCATGTTTTTAACCCCTCTGAAAGTGAATTAAGAGAACAAGCTAGCAGGTTGGCGCAAACATATAATCTGGATGTGATGGAGAATCTAATCCCAGACAAACCCAAATGTGGAGCCTGTGGAAGAACGGGTGCAAAACGCTGCTCCCGCTGTCAGGGGGAGTGGTACTGCAACAGAGAGTGTCAGGTGAAACACTGGTCCAAGCACAAGCCTGCATGCAAACTTATGGCAGAAGCCATACAAAGACTACAGGAGGAACTGAACATCAGCAGCTGAATTACAGCACTGCTAAATGAAAGGGATGGAGAGAGTGATGCTGTGGGATTCAGAAGTGCATAAGAACACATTCACTATGAATATTTATATGGACACTAATGGAAAGGGGAAAAAAGATACAAGAAACTGTTCCTGACAGTCTTCTTTCATTAGCTGCTCTATGTTTGTATATTGTGTTCAAAGAAAGTAATTAAATCATTCCTGATGAAATCATTCATATATAGTACATGTTCTTTGTAAATGCATGCACATGAACATGGTTATATTTGACATAAAACTATTATTTGCACACAATTAAATTGATTGATTGATAATTGTTAAAATATAACCATTATACTTAATGTAATTAAAATACATTTGAGATCCAGTCACTGATTTTTACTGACTCAACTTTATTGCATTTGTTGTAATAATATTTCGTGGAACACAAAAAGAAGAAACTTTGAACAATGTCTTTGCCACTATTTTCCATGTGGTTACAATGAATGGTGTCTAGAGCTTTTAAACATACTTTAATCCTTTCTTAAAATGGATGCAAAAGCACA

Function

symbol description
zmynd10 Predicted to enable metal ion binding activity. Predicted to be involved in cilium assembly and positive regulation of motile cilium assembly. Predicted to be located in apical plasma membrane and dynein axonemal particle. Predicted to be active in centriolar satellite and cytoplasm. Is expressed in several structures, including Kupffer's vesicle; forerunner cell group; nervous system; neural tube; and pronephric duct. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 22. Orthologous to human ZMYND10 (zinc finger MYND-type containing 10).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000300_08599231_08604382.mRNA True 1892 mRNA 0.40 12 8599231 8604927

Neighbor

gene id symbol gene type direction distance location
CI01000300_08567722_08574695 ANXA5B coding upstream 23642 8567722 ~ 8575613 (+)
CI01000300_08319762_08322122 DNAH6 coding upstream 276937 8319762 ~ 8322294 (+)
CI01000300_08252260_08318173 DNAH6 coding upstream 280617 8252260 ~ 8318614 (+)
CI01000300_08229980_08248846 KDM4C coding upstream 350385 8229980 ~ 8248846 (+)
CI01000300_08091709_08137762 PAX5 coding upstream 460483 8091583 ~ 8138748 (+)
CI01000300_08713685_08718935 GTF2E2 coding downstream 108758 8713685 ~ 8719736 (+)
CI01000300_08874463_08915149 NA coding downstream 269536 8874463 ~ 8915221 (+)
CI01000300_08917691_08926730 NA coding downstream 312764 8917691 ~ 8927877 (+)
CI01000300_08949418_08957810 LIAS coding downstream 344394 8949321 ~ 8957857 (+)
CI01000300_08979290_08987162 UBE2KB, UBE2K, UBE2KA, UBE2K.S coding downstream 373306 8978233 ~ 8988778 (+)
G413347 NA non-coding upstream 38396 8558594 ~ 8560835 (+)
G413304 NA non-coding upstream 148421 8450499 ~ 8450810 (+)
G413290 NA non-coding upstream 173012 8425964 ~ 8426219 (+)
G413280 NA non-coding upstream 187808 8396682 ~ 8411423 (+)
G413376 NA non-coding downstream 54121 8659048 ~ 8707352 (+)
G413385 NA non-coding downstream 68892 8673819 ~ 8674215 (+)
G413405 NA non-coding downstream 133719 8738646 ~ 8738880 (+)
G413408 NA non-coding downstream 135674 8740601 ~ 8740904 (+)
G413409 NA non-coding downstream 135979 8740906 ~ 8741320 (+)
G411777 NA other upstream 2129526 6469245 ~ 6469705 (+)
CI01000300_05891147_05892754 HELT other upstream 2706806 5891021 ~ 5892824 (+)
G410388 NA other upstream 4402676 4195646 ~ 4196555 (+)
G410382 NA other upstream 4474815 4123698 ~ 4124416 (+)
CI01000300_03901275_03902800 NA other upstream 4697080 3901148 ~ 3902892 (+)
G413459 NA other downstream 339556 8857687 ~ 8948603 (+)
G414249 NA other downstream 1764984 10369911 ~ 10373898 (+)
CI01000300_10604458_10604787 NA other downstream 1995009 10604458 ~ 10605033 (+)
CI01000300_10661680_10669987 MXD4.L, MXD4 other downstream 2041264 10661680 ~ 10674265 (+)
CI01000300_11704476_11708232 NA other downstream 3098557 11704476 ~ 11708351 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000272 zmynd10 coding NC_007112.7 CM002885.2 22691256 ~ 22703383 (+)