XLOC_000272 (zmynd10)


Basic Information

Item Value
gene id XLOC_000272
gene name zmynd10
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 22691256 ~ 22703383 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000447
ACGGAAGATGATATCCCCTAATAGAAGTATAATAGAGTGTGTTTGAAAAGCTGCTAGTTTAGGTTTCTGTAGAAAACATTCTGAAGCGATGGATTCAGTACTTCTACACGAAGAAGCTGAAGGATACATTCAAAGCCTGGAAAAGATGTCATTGCGCGATATCGGAAGCCCGAGatgGTTTCGCCAGCATGAATTTATTGAGAAGCTGAATATGCAAGCTATTCTGAACGCCAGCGCCAATCAGGAGGAATTCATTAAAGACCTTTTCGTTTCTCTCggaaagATTCCCACACTGGTACATGCCATGATACTTACCGAAGTATGGAAACATAAAGTGTTTCCTAAAATTTGCAAACTCCAGGACTTTAACCCAAAGAGCACATTTCTTCTGTACATGGTGATTCATCATGAAGCTACCATTATAAACCTGCTGGAGACGATTATGTACCACAAAGAGTCCAGTGAAGCTGCTGGTGATTGTGTTCTTGACTTAGTGGATTACTGTCATCGCAAACTCACACTGCTAGTGGGACGCTCTGTATCTGGAGAAATTTCAACTCAGgacagaatcacacacacacagatttcagGCACGGCATCTGTACAGGATCTGCAAAAGCAAAGTGATATGTTAGAGTTTGAAATCTCTATCAAGGCTCTGTCAGTCCTGTGCTACATTACTGATCACGTTGAGAGTTTGAGTTTGAGTGTGCTCTCGCGGATGCTGTGCACTCATAATATGCCATGTGTGCTGGTTCAGCTGGTGGAAAATTGCCCCTGGAAAAGAGGTACACAGGAGAAATACACAGAGGGCAAATGGAGAGCCGTCCTCCCTGAAGATCAGCTGAAGCTGAGTAAACATGATGGCCAGGTGTGGATAGCTTTACTAAACCTGATGCTCAAACCAGACTGCCAGCGGAAATATGATTTCAACAGCTTCAATAAAACACAACTCTTAAAACTTCGTGGGTTTCTGACAGATGTTGTGATAGATCAGTTACCAAACTTACTTGATCTCAAGCATTTCCTCAGTCAACTTGCTCTCACAGATCCAGTGGCTCCTAAAAAAGATCTCATCTTGGAGCAGCTGCCAGAAATATGGAATAATATTGTAATGGAGAATGACAAGAAGTGGAAAGCCATTGCCAAATACCAAGTGACGAATGTTTTTAACCCCTCTGAAAGTGAACTGAGAGAACAGGCTAGCAGGTTGGCTCAAACGTATAATCTGGATGTGATGGAGAATCTAATCCCAGACAAACCTAAATGTGGAGCCTGTGGAAGAACGGGTGTGAAACGCTGCTCCCGCTGTCAGGGAGAGTGGTACTGCAACAGGGAGTGTCAGGTGAAACACTGGCCCAAGCACAAGCCCTCATGCAACCTCATGGCAGAGGCTTTCCAGAAACTGCAGGAGGAAATGAAGATCAGCAGCTGAAGGGGAGGGATGCTGTGGACACAGATATGCTTTACAACATGTCCACTACTGAACGTCTTATTGAATGCACACTAATAGTAAAAGACACAAGAAACTGTT

Function

symbol description
zmynd10 Predicted to enable metal ion binding activity. Predicted to be involved in cilium assembly and positive regulation of motile cilium assembly. Predicted to be located in apical plasma membrane and dynein axonemal particle. Predicted to be active in centriolar satellite and cytoplasm. Is expressed in several structures, including Kupffer's vesicle; forerunner cell group; nervous system; neural tube; and pronephric duct. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 22. Orthologous to human ZMYND10 (zinc finger MYND-type containing 10).

GO:

id name namespace
GO:1905505 positive regulation of motile cilium assembly biological_process
GO:0044458 motile cilium assembly biological_process
GO:0036158 outer dynein arm assembly biological_process
GO:0036159 inner dynein arm assembly biological_process
GO:0034451 centriolar satellite cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016324 apical plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-040426-1218 Predicted to enable metal ion binding activity. Predicted to be involved in cilium assembly and positive regulation of motile cilium assembly. Predicted to be located in apical plasma membrane and dynein axonemal particle. Predicted to be active in centriolar satellite and cytoplasm. Is expressed in several structures, including Kupffer's vesicle; forerunner cell group; nervous system; neural tube; and pronephric duct. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 22. Orthologous to human ZMYND10 (zinc finger MYND-type containing 10).

Ensembl:

ensembl_id ENSDARG00000002406

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000447 True 1534 mRNA 0.44 12 22691256 22703383

Neighbor

gene id symbol gene type direction distance location
XLOC_000271 anxa5b coding upstream 26158 22654875 ~ 22665098 (+)
XLOC_000270 CR376846.1 coding upstream 169930 22521212 ~ 22521326 (+)
XLOC_000269 NA coding upstream 172502 22510734 ~ 22518754 (+)
XLOC_000268 si:dkey-234d14.2 coding upstream 262403 22427135 ~ 22428853 (+)
XLOC_000267 dnah6 coding upstream 455835 22002649 ~ 22235421 (+)
XLOC_000273 BX908795.1 coding downstream 139552 22842935 ~ 22876174 (+)
XLOC_000274 si:dkey-92j12.5 coding downstream 457986 23161369 ~ 23240046 (+)
XLOC_000275 CR759875.1 coding downstream 558474 23261857 ~ 23292761 (+)
XLOC_000276 lias coding downstream 571327 23274710 ~ 23283468 (+)
XLOC_000277 ube2kb coding downstream 608234 23311617 ~ 23322969 (+)
XLOC_000263 NA non-coding upstream 1189772 21500645 ~ 21501484 (+)
XLOC_000262 NA non-coding upstream 1349603 21331425 ~ 21341653 (+)
XLOC_000260 CR762427.1 non-coding upstream 1436774 21254353 ~ 21254482 (+)
XLOC_000281 NA non-coding downstream 785728 23489111 ~ 23506518 (+)
XLOC_000283 CT573447.1 non-coding downstream 1047716 23751099 ~ 23751213 (+)
XLOC_000285 dre-mir-218a-2 non-coding downstream 1163495 23866878 ~ 23866965 (+)
XLOC_000287 BX119984.1 non-coding downstream 1411142 24114525 ~ 24114558 (+)
XLOC_000288 NA non-coding downstream 1414984 24118367 ~ 24119067 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000300_08599231_08604382 ZMYND10 coding CI01000300 null 8599231 ~ 8604927 (+)