XLOC_000281


Basic Information

Item Value
gene id XLOC_000281
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 23489111 ~ 23506518 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000466
tgtgTACGACTTCTAGTGAGCAAGTGTAATTTCTTTGCTCCAGATCACAAGGTGGCGATAACGCACGTTGTGCGTTGGATTACCATTCCGCCAAAACAAAcatcagaagaagaagaacaaaagAACCCAATCAGCGACTCCTCTCAGTTTGAACGTGAAGCGGTTTAATATTGTGTTGCTTTTACAGAAGTTATAACGTTATTTAAATAATCTCTGGAAGGGATCTGCATGTCGAAAACACGATCGCAAGTAAACGTCCAAGATGAACGCAAGAGGAAAAAACGGGCCGGTATTTATCAAGACATACAGTAAACGAATGCGAAAGTTGGAGCCTTGGATCTCCCCTGACCTAAGAAAAGCGGCTTTCTCTTTTTCAAGCACTTTTTCATCAGATCAGTCGATACAAGAGACCCCAAAGCCCAAGAAAAGaaaaataaaagaaacttcCTCCCGCACTGCTAAGACCAAAGTGATGGCTGCcataaaggaaaataaaagtgATGAAGAAAACTATTCACCATCCTTACCTTCCAGAAAGAAAATACATGCAAAACCCTCAGTAAAGACTACAGCCATGAGAAAGCCTCGAACCACAAAGAGGACAAAAAAAAGTACACAATTAAATCTCAGCAGCAGTGAAAATGATGACGACTCCATTATGATAAACCATGTTAGTTCCAAAACTGCTGCTAATGAATGTGCTGGtaATGACAAGAAAGTTTTACATCCTCCTTATTTGGGCAAGTTTGTCACAAGTCGCAGAAGACCACTGCCACCCATCCAAACCAAGCAAATTGCTGTTCTTCACCACACATTAAATTCATCTGATGATTTCCTCCCATCATCCTTCCAAAACAAGCGCAGGAAGACTGTGTGCATGAAAAACTATGACTCAAATAAACATGCTGCTCGCAAATGCTTACAGAACCGTGTGCCTCTGGCTGAGGTATCTTTTAATGACAGCGATGACCAGCATCTCCCAAGTAAATGTCCCCTTCTGTCCAGCACCCCTTCTGTAGTCTGCAGACAGCTGAAAAACCTACCAGAGCCCTCCATCAGTGAGATCTCCTCCCTCAGCTTTGATGAATCTGGACAACCTGCcgaaaacaacaacaattctAATGGTTTGGACTATGTCAAAGAATGCGATATCATTCCACAGGCAAACACTAAGCAACAGCTCCAAAACCCAGGTGTCTGTTCTGAGAGAGTCATAGAACTGAAAGAGGGAGAAAAGGATGTAACTGAGAAAAGGAAAGATGATTACAGAGAGATGGTTCAGCATAAAAGAGGATTCTCAGAGGCCATGTCTGCTCAGACACACACAGGTTTTGGTTGTGTGTCACCACAGTCACAACTACAATCTTTAGAAGAAGAGTTAAAAGAGAGGTGTCACAAAGTGGAGACGGCTGTAAGGCTCAAAAAAATTAACATCTCAGATTATTCATCACTGCTGGGCTGCAGCAAGAAACAGGAAGAGAGGACTGCCTTAAACTCTTTGGAGTCGATCATGCCGGCAGAAATTCTGAGCAGCCAAACTTATGTAACTGTATCATCCAGCTGCTCTACACCATCGAAAGCATCCATCTATTTCTCTTCCTCTAAATCACTCTCCCCTTCCCATTTACCAGAAGCAAACCAGTCTCTTATTGAACGTCTTAAGGCTGAATGTCTGTTATCATCCCTTGCTGTCTGCATTCCTCGTCTTGACTTGGGCGTGTATTCTTTTATTCCACATGGAGTGACAAAAGCACCCTGCACTGATAATTCATACATCTGCCACAAGGACTCTGCCACTTCCCCAACTTTAAAGAAGGCAGAGCATGTTATGCTAGATAGTCCAATTAATCACAGGACTCCTGGTAATTTGAAAGCGGTTGCCCAACACTTGTTTCTACCACTTCAACCACCTACGGTCTCTCCACCTGCCTCTGTAGCTAATAGCAAAAACCGACCGCCTGTTGTGACTAAAGAACGAGCTGGTACTGGCACGGGTCGTAAAGTTTGTGTGAGTGGACTGAATGTTAGCCGGTGGTCTAAGAAGGGTGCTGGAGAATTCCAAGACAAAAGAAGGAAAAGGGAAGGCCGAACAAAGGCTGCTTCAGGAGACTACAGTTCATGGGGCAGTATGTTGTCTACTGGAGCAGACACCTTTGTAAAGGAATCCGCATGTGGCATGGTGCAGGGCACCAGTGGGTTGAGTCTGGCTGTGACACCTCTCAGACTTGAGCAAATGAATCTCTCTTCTTTTCTGGCCAACTTCACTCCTGACAATCTCACAACACACTCCTGGGGCAGACTAAAGGCGGCACTTTCCCTGCATAAGAAAAAAACTGcATTTCCCACCCCACGGCGCTTTGCTCAGTCTCACCTGAAGTCCCCTGGCATTGGATTTCCAGCAGACAACAGTCTAGACCTTTTTGCTTCGCCTTTCTGCACACCATCCAGAATGAAAAGTTCACAGATGCTCCAGTCCACTATGAACACCCCCATGACTACATTTCAAGAGGATATCAGTGATGCAGAAAAGGTATATCAGGAATGTCAGCAGAGCGGCCCACTTTCGTTTAGCGACTGCATCCCTCCTGCTCGCATGAAGCACCTCAATAAAATTGGTGAAGGGACATTTGGAGAGGTCTTCTCAACTATAAATGATTCCAATGAGAGTGTTGCTCTCAAAATCATCCCAGTAGAAGGCAGTCAGCAGGTCAATGGTGAACATCAGAAAACATTTGGGGAAATCCTTCATGAAATCATCATTTCCAAAGAGCTGAGCAGCCTTAACCTGAAGGAGTTTAACAAGTCGGATGGTTTCATTGGACTTAACAACCTACATTGTGTCCGTGGGTGTTATCCTGAAGCTCTGCTTAAAGCATGGGACAAGTTTGACCATCAGAAAGGGTCAGAGAATGATCGACCTGATTTCTTTGATGACGAACAGCTATTTTTAATCCTGGAGTTCGAATTTGGAGGAAGTGATCTGGAAAACATGAATGGCAAGCTATCCTCTATGGCCCAGGCCAAAAGTGTGCTACATCAAGTCACTGCATCCTTGGCTGTAGCCGAGCAAGCGCTTTGCTTTGAACACAGAGATCTTCATTGGGGGAACATACTGGTGAAGAACGTCAAGCACAAGCACAACGAATTCATTCTGAATGGAACAGTTCATTGCATTGAGACACGAGGAGTTCACGTCAATATTATTGACTACTCGCTCTCACGCCTGGAAATCGATGGACTGACTGTATCATGCGACATCTCTTCCGATGAGGAGTTGTTTATGGGTCAGGGAGATTATCAGTTTGAAATCTACCGTCTTATGAAGAAAGAAAACAAAAACTGTTGGTCGGCATATAATCCTCATTCCAACGTGCTGTGGCTGCACTATCTGGCTGATAAACTTTTGAGCATGAACTACAGGAACAAAACCCAGTCCAGCCAGCAGAGGACACTGAAGAGTGCCCTCAATGCTTTTAAGTCAGAGATAATGAATTATCCGTCAGCTACAGAAGCTCTTATGAAGTGCAGTTTCTTTCAGTGAAACGGCTGTTTTAATTACCACAGTAAATAGACCTGTATATTTAGAATGATTAATCCAGAACAGATAGAATGTTCTACTATTttgtacaaaatatattaaaaaaacaaataaagaaaatgtgcaatc
>TCONS_00000467
GCATTGAGACACGAGGAGTTCACGTCAATATTATTGACTACTCGCTCTCACGCCTGGAAATCGCATTAAATGTATTCtggatatacactcaccagccactttattggtTACACCTGTAAACGAGCAGTTGAATGCAAATTTcatatcagccaatcacacagcagcaactcaatgaatttaagcgtgtggacatggtcaagataatctgcctcagttcaaaccgagcatcagaatggggaagaaagggtttacagagaatggtccgaaaaaatggttccagctgatagaaagggaacagtgactcaaataaccacttgttataactgaggtatacagaagagcatctctgaacgtacaacacatccaaccttgaggtgaatgggctacagcagcagaagaccacactgggtgccactcctgtcagctaagaacaggaaactgaggctacagttcgcacaggctcaccaaaattggacaatagaagattgaaaaaaggttgcctggtctaatttggatggtagggtcagaatttggtgtcaacaacat
>TCONS_00000468
CAAGCAATTTAAAGATGAGCCATGTATGTCATTTTAAGCAGAATTTGACCAGGGATTTTATTTGGAGCTTGTTCAGTTTAAAACTACttgccaaaacaaacttttaatatgcttttacattttgtgtccatttatatattaatcttattgtatttatgttaaacatcattaaccGTTATGAATGCTATCCAAAAGTTATGACTATAacaaaatcacacttttttttaaaaactgtttagaCATGGTTTAAGTTCAGGTGATGGAGTTGAAGAAGCTGTGAACTTGATATAAATGGTAAAATGTTTGCAAACCCTTTTTTGTCTCCTCAGATGGACTGACTGTATCATGCGACATCTCTTCCGATGAGGAGTTGTTTATGGGTCAGGGAGATTATCAGTTTGAAATCTACCGTCTTATGAAGAAAGAAAACAAAAACTGTTGGTCGGCATATAATCCTCATTCCAACGTGCTGTGGCTGCACTATCTGGCTGATAAACTTTTGAGCATGAACTACAGGAACAAAACCCAGTCCAGCCAGCAGAGGACACTGAAGAGTGCCCTCAATGCTTTTAAGTCAGAGATAATGAATTATCCGTCAGCTACAGAAGCTCTTATGAAGTGCAGTTTCTTTCAGTGAAACGGCTGTTTTAATTACCACAGTAAATAGACCTGTATATTTAGAATGATTAATCCAGAACAGATAGAATGTTCTACTATTttgtacaaaatatattaaaaaaacaaataaagaaaatgtgcaatc

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0051276 chromosome organization biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0043249 erythrocyte maturation biological_process
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0042393 histone binding molecular_function
GO:0019783 ubiquitin-like protein-specific protease activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-090313-379 Predicted to enable histone kinase activity (H3-T3 specific). Predicted to be involved in intracellular signal transduction and mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm and nucleus. Orthologous to human HASPIN (histone H3 associated protein kinase).

Ensembl:

ensembl_id ENSDARG00000092290

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000466 False 3667 lncRNA 0.44 18 23489111 23506518
TCONS_00000467 False 546 processed_transcript 0.43 3 23504334 23505103
TCONS_00000468 True 763 lncRNA 0.34 2 23505666 23506518

Neighbor

gene id symbol gene type direction distance location
XLOC_000280 chrna9 coding upstream 71174 23406403 ~ 23417937 (+)
XLOC_000279 rhoh coding upstream 90119 23398405 ~ 23398992 (+)
XLOC_000278 n4bp2 coding upstream 92657 23372470 ~ 23396454 (+)
XLOC_000277 ube2kb coding upstream 166142 23311617 ~ 23322969 (+)
XLOC_000275 CR759875.1 coding upstream 196350 23261857 ~ 23292761 (+)
XLOC_000282 ncapg coding downstream 52960 23559478 ~ 23573230 (+)
XLOC_000283 CT573447.1 coding downstream 244581 23751099 ~ 23751213 (+)
XLOC_000284 slit2 coding downstream 276831 23783349 ~ 23912788 (+)
XLOC_000285 dre-mir-218a-2 coding downstream 360360 23866878 ~ 23866965 (+)
XLOC_000286 mab21l2 coding downstream 569725 24076243 ~ 24078099 (+)
XLOC_000270 CR376846.1 non-coding upstream 967785 22521212 ~ 22521326 (+)
XLOC_000269 NA non-coding upstream 970357 22510734 ~ 22518754 (+)
XLOC_000263 NA non-coding upstream 1987627 21500645 ~ 21501484 (+)
XLOC_000262 NA non-coding upstream 2147458 21331425 ~ 21341653 (+)
XLOC_000260 CR762427.1 non-coding upstream 2234629 21254353 ~ 21254482 (+)
XLOC_000287 BX119984.1 non-coding downstream 608007 24114525 ~ 24114558 (+)
XLOC_000288 NA non-coding downstream 611849 24118367 ~ 24119067 (+)
XLOC_000289 NA non-coding downstream 619862 24126380 ~ 24144170 (+)

Expression


Co-expression Network