XLOC_000286 (mab21l2)


Basic Information

Item Value
gene id XLOC_000286
gene name mab21l2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 24076243 ~ 24078099 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000479
ATAAACTAAACAATTCCAACACTCACGGCTGAGTCTGGACAACTGCACACTGGCACACAGTTTTGACGCGCAAACACAAGTGAGAGATGATGACATGATGCGCGGAGATTCATCCTGCAGCTGATACTGGCTCGGAGAGCAAGTTAAACccttaaaacctttttttaagtTGAGTTGAAGAAGTCGCACTGTCTTGGATCCATCCGTTTCCTGGTCCAAACTTGACGTCTATCCGCTGCGGGCGCAAACTTCATCATCACTtgatcttttgtttttttgtttttcttttcctgGGAGTTGTGCCTCTGGCTTCACCGGTAAGCATTGGATCCATCGGCGTACTGCGAAACTCCGGTCTACAGTCCGGATCTGTGCCCAAACATGATTGCAACGCAAGCAAAGCTGGTTTACCAGCTTAATAAATATTACAACGAAAGATGCCAGGCGCGCAAAGCGGCCATCGCCAAGACCATACGAGAGGTGTGTAAGGTGGTGTCGGATGTGCTGAAGGAGGTGGAGGTCCAAGAGCCCCGTTTCATCAGCTCCCTGAGCGAGATAGACGCGCGCTATGAGGGCATGGAGGTCATCGCACCCAACGAGTTTGAGGTCGTACTTTACCTGAACCAGATGGGGGTGTTCAACTTTGTAGACGATGGCTCTCTGCCGGGCTGCGCGGTGCTCAAGCTCAGCGACGGCCGCAAGAGGAGCATGTCCCTGTGGGTGGAGTTCATCACCGCCTCCGGTTATCTATCGGCACGAAAGATTCGCTCCCGCTTTCAGACGCTGGTTGCCCAGGCCGTGGATAAATGCAGCTACCGGGACGTGGTTAAGATGGTGGCGGACACGAGCGAAGTGAAACTGCGCATTCGGGAGAGATACGTCGTGCAAATCACCCCGGCCTTCAAGTGCACGGGCATCTGGCCTAGGAGTGCCGCTCAGTGGCCCATGCCTCACATCCCGTGGCCCGGGCCGAACCGGGTGGCGGAGGTAAAAGCGGAGGGGTTTAACCTGCTCTCTAAAGAGTGCTACTCATTGACGGGCAAGCAGAGCTCGGCAGAAAGCGACGCCTGGGTCTTGCAGTTCGCCGAGGCCGAGAACAGGCTTCTGATGTCGGGCTGTAGGAAGAAATGCCTCTCTGTTCTAAAGACTCTCCGTGACCGACACCTCGAGCTGCCGGGACAGCCGCTTAATAACTACCACATGAAGACCCTACTGCTATACGAGTGCGAGAAACACCCGCGGGAGACTGACTGGGACGAGTCGTGCCTCGGCGACCGACTGAACGGTATTCTGCTGCAGCTCATCTCCTGCCTGCAGTGCCGCCGGTGCCCACATTACTTCTTACCCAATCTAGACCTGTTTCAGGGTAAACCACACTCGGCTCTGGAGACAGCGGCCAAACAGACCTGGAGACTGGCAAGAGAAATCCTTACCAACGCTAAAAGTTTGGATAAACTGTAAGATGCAAAAGGAGGACATTTTATGATGGTGAAAAGCCTATTTACGGACGTTTGCGATCACAACACTGAAAGTGGAGAGAATGTGATCGTGCTGCTCTCCGGGTAACGaaagcaagaaaataaaaaaattaaatgaaacttaGAAAAACCCTGAAGCATTTGCTTTTTGCCAAGGCTCAAATGGGACATTTCAGGAGAGAGAAATGAAGGTACATTTTAAACTAAGTGTAATGATTTTGTTGTTTGTTCGAACTGTTTTCACAAagtgaaaattttatttaaatacatgcaCAAGATCTTTAATTGCAAATTACAAAATGTAGCGTGCCAAGTTCTTTTTTCATGATGTGAACAAAATATTAACGTGTAATAAAATCATGACACGATGAAATTTAAA

Function

symbol description
mab21l2 Acts upstream of or within camera-type eye development; embryonic cranial skeleton morphogenesis; and enteric nervous system development. Located in cytoplasm and nucleus. Is expressed in several structures, including anterior neural keel; immature eye; nervous system; neural tube; and pharyngeal arch. Used to study coloboma. Human ortholog(s) of this gene implicated in coloboma and syndromic microphthalmia 14. Orthologous to human MAB21L2 (mab-21 like 2).

GO:

id name namespace
GO:0061386 closure of optic fissure biological_process
GO:0043010 camera-type eye development biological_process
GO:0007275 multicellular organism development biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0002089 lens morphogenesis in camera-type eye biological_process
GO:0061303 cornea development in camera-type eye biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0001654 eye development biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-011101-3 Acts upstream of or within camera-type eye development; embryonic cranial skeleton morphogenesis; and enteric nervous system development. Located in cytoplasm and nucleus. Is expressed in several structures, including anterior neural keel; immature eye; nervous system; neural tube; and pharyngeal arch. Used to study coloboma. Human ortholog(s) of this gene implicated in coloboma and syndromic microphthalmia 14. Orthologous to human MAB21L2 (mab-21 like 2).

Ensembl:

ensembl_id ENSDARG00000015266

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000479 True 1857 mRNA 0.50 1 24076243 24078099

Neighbor

gene id symbol gene type direction distance location
XLOC_000284 slit2 coding upstream 163455 23783349 ~ 23912788 (+)
XLOC_000285 dre-mir-218a-2 coding upstream 209278 23866878 ~ 23866965 (+)
XLOC_000283 CT573447.1 coding upstream 325030 23751099 ~ 23751213 (+)
XLOC_000282 ncapg coding upstream 503013 23559478 ~ 23573230 (+)
XLOC_000281 NA coding upstream 569725 23489111 ~ 23506518 (+)
XLOC_000287 BX119984.1 coding downstream 36426 24114525 ~ 24114558 (+)
XLOC_000288 NA coding downstream 40268 24118367 ~ 24119067 (+)
XLOC_000289 NA coding downstream 48281 24126380 ~ 24144170 (+)
XLOC_000290 NA coding downstream 258881 24336980 ~ 24343734 (+)
XLOC_000291 rps3a coding downstream 277416 24355515 ~ 24359653 (+)
XLOC_000270 CR376846.1 non-coding upstream 1554917 22521212 ~ 22521326 (+)
XLOC_000269 NA non-coding upstream 1557489 22510734 ~ 22518754 (+)
XLOC_000292 NA non-coding downstream 283894 24361993 ~ 24363690 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000300_09486849_09487928 MAB21L2.S, MB211, MAB21L1, MAB21L2, MAB21L1.L, MAB21L2.L coding CI01000300 null 9485781 ~ 9488024 (+)