XLOC_000289



Basic Information


Item Value
gene id XLOC_000289
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 24126380 ~ 24144170 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00003069
GTGCAAAGCCCCATGGACCTCTCTGACAATGCATCCACGAGCAGAAGAGGGAGGGAGCACGTGAGGAATGAAAGCGGGAGAGAGAGAAAATCACCTAACACCTCAACTCTCCTGAGGACGGGGCTGCTGTAAGCTGGATATTAAGACACAAATTGCATTCAGGCGGGAACACAGACACTAAACGCTAATGAAGTGGCCCATCACCTCTCTACACACACTTCAGTCAGAAGTCAACTCAATTACACTCCATCAATTCAAGATCAAGTGAAAGCTAAGAAGAAAAAACAAGACCCAGAGAAAGACGGAACAATGACCTCGTTCTATCACATCCTCAAGATCTGGTCTTGAGGCTCAGTATCCTCCacatttcatttctaataaagAAAGCCT

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00003069 True 390 lncRNA 0.46 2 24126380 24144170

Neighbor


gene id symbol gene type direction distance location
XLOC_000288 NA coding upstream 7313 24118367 ~ 24119067 (+)
XLOC_000287 BX119984.1 coding upstream 11822 24114525 ~ 24114558 (+)
XLOC_000286 mab21l2 coding upstream 48281 24076243 ~ 24078099 (+)
XLOC_000284 slit2 coding upstream 213592 23783349 ~ 23912788 (+)
XLOC_000285 dre-mir-218a-2 coding upstream 259415 23866878 ~ 23866965 (+)
XLOC_000290 NA coding downstream 192810 24336980 ~ 24343734 (+)
XLOC_000291 rps3a coding downstream 211345 24355515 ~ 24359653 (+)
XLOC_000292 NA coding downstream 217823 24361993 ~ 24363690 (+)
XLOC_000293 pimr178 coding downstream 221412 24365582 ~ 24367412 (+)
XLOC_000294 zgc:171517 coding downstream 232224 24376394 ~ 24380533 (+)
XLOC_000283 CT573447.1 non-coding upstream 375167 23751099 ~ 23751213 (+)
XLOC_000281 NA non-coding upstream 619862 23489111 ~ 23506518 (+)
XLOC_000297 NA non-coding downstream 318290 24462460 ~ 24463305 (+)
XLOC_000300 NA non-coding downstream 452156 24596326 ~ 24599988 (+)
XLOC_000301 BX005016.1 non-coding downstream 975919 25120089 ~ 25120205 (+)

Expression



Co-expression Network