XLOC_000293 (pimr178)


Basic Information

Item Value
gene id XLOC_000293
gene name pimr178
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 24365582 ~ 24367412 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000486
ATCTTCAGCCAATATGTGCTTGGTAAAAAACTGGGAGCAGGTGGATTCGGTGTCGTGTATGAAGCAAGGCGTTTGGTGGACAATCTCCAAGTGGCAGTTAAATACGTCAACAAGAAAGGCGACGACTGGGAACTATGGGATGATCAACACAGCAGAATGCTTCCATTGGAGATCGTCCTCACATTGATGGCAAATAAAGGGTGCAAAGAGCCAGGGATCATCCAACTGCTGGACTGGAAGGTTTACCGGGATCATTTCATCATGATCTTCGAGTATCCTTCTCCATGTCAGGATTTGGAGGTTTTTATGAGGAATCAAGGTGGCAAAGTCAGTGAGAGTTTCGCAAGGCAAGTCATGACGCAGATTATTCAGGCTGCGCTCGTGTGCTGCCAGCGTGGTGTCTTTCACCGGGATATCAAACTCTCCAACCTTCTCATCAACACCGAGACATTTCAAGTCAAACTAATTGACTTTGGCTGCGGAGCCATTTTGAAGAAATCTTACTACAGGACCTTCAGTGGGACATTTTTGTACATTCCTCCTGAGTACATTTTTGAAGGGAAATACCATGCCAATCCTGCGACAGCATGGTCTCTGGGGATATTGCTATTCAGATTGGTGTGCGGAAGATATCCATTTTTCTTACCTCTGCTGTGGATCAGATGGAAAATCTGGTGCAGATGTGACCTGTCAAACGAACTAATCCATCTTCTCCATGATCTCCTTGAGATAAACCCAGACAAACGGATTCATCTGGAGGACATTCTTCAACACAGCTGGTTTAAGGTACTGAACACAACAGCATCTCAACATAATTTTAGACGTCCGTTGTGTTCttctacattaaatgtttaa
>TCONS_00000487
GATCAACACAGCAGAATGCTTCCATTGGAGATCGTCCTCACATTGATGGCAAATAAAGGGTGCAAAGAGCCAGGGATCATCCAACTGCTGGACTGGAAGGTTTACCGGGATCATTTCATCATGATCTTCGAGTATCCTTCTCCATGTCAGGATTTGGAGGTTTTTATGAGGAATCAAGGTGGCAAAGTCAGTGAGAGTTTCGCAAGGCAAGTCATGACGCAGATTATTCAGGCTGCGCTCGTGTGCTGCCAGCGTGGTGTCTTTCACCGGGATATCAAACTCTCCAACCTTCTCATCAACACCGAGACATTTCAAGTCAAACTAATTGACTTTGGCTGCGGAGCCATTTTGAAGAAATCTTACTACAGGACCTTCAGTGGGACATTTTTGTACATTCCTCCTGAGTACATTTTTGAAGGGAAATACCATGCCAATCCTGCGACAGCATGGTCTCTGGGGATATTGCTATTCAGATTGGTGTGCGGAAGATATCCAT

Function

symbol description
pimr178 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000094885

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000486 False 855 mRNA 0.44 5 24365582 24367412
TCONS_00000487 True 496 mRNA 0.46 2 24366110 24367056

Neighbor

gene id symbol gene type direction distance location
XLOC_000292 NA coding upstream 1892 24361993 ~ 24363690 (+)
XLOC_000291 rps3a coding upstream 5929 24355515 ~ 24359653 (+)
XLOC_000290 NA coding upstream 21848 24336980 ~ 24343734 (+)
XLOC_000289 NA coding upstream 221412 24126380 ~ 24144170 (+)
XLOC_000288 NA coding upstream 246515 24118367 ~ 24119067 (+)
XLOC_000294 zgc:171517 coding downstream 8982 24376394 ~ 24380533 (+)
XLOC_000295 qdprb2 coding downstream 15239 24382651 ~ 24385979 (+)
XLOC_000296 qdprb2 coding downstream 20247 24387659 ~ 24391673 (+)
XLOC_000297 NA coding downstream 95048 24462460 ~ 24463305 (+)
XLOC_000298 fam160a1a coding downstream 101901 24469313 ~ 24514673 (+)
XLOC_000287 BX119984.1 non-coding upstream 251024 24114525 ~ 24114558 (+)
XLOC_000300 NA non-coding downstream 228914 24596326 ~ 24599988 (+)
XLOC_000301 BX005016.1 non-coding downstream 752677 25120089 ~ 25120205 (+)
XLOC_000304 NA non-coding downstream 1072625 25440037 ~ 25442701 (+)
XLOC_000305 NA non-coding downstream 1182641 25550053 ~ 25553299 (+)

Expression


Co-expression Network